H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000000205 Accession number: AB007958 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Transmembrane protein 63A;
 
 

Transcript original information
Accession number AB007958.1
CAGE tag ID NA
EST ID NA
Clone Number HG1128
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TMEM63A) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TMEM63A);
Sequence data provider Provider:KDRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 5406[bp] (No. of exon:4)[A:1238 T:1369 G:1432 C:1367]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGCAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0199783
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226047363- 226053911
Strand -
Possible duplicated location(s) NA
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:9725; 
KEGG GENES KEGG GENES(9725); 
GeneCard GeneCardTMEM63A;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000122183
Predicted CDS 2275..2853;  192[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.811

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000000205
H-Inv cluster ID Locus viewHIX0199783
Accession number AB007958.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to Transmembrane protein 63A;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q91YT8)  [Identity/coverage = 89.381%/14.05%] to Mus musculus (Mouse). protein.
Experimental evidence Protein evidence
PubMed ID 15368895;  15489334;  16141072;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TMEM63A
HGNC aliases "KIAA0792"
HGNC name transmembrane protein 63A
DDBJ NA
UniProt Tmem63a
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000122183
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:9725; 
KEGG GENES KEGG GENES(9725); 
GeneCard GeneCardTMEM63A;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsB170515; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 214833_at; 
HG-U133A 214833_at; 
HG-U133A_2 214833_at; 
HG-U133B NA
HG-U133_Plus_2 214833_at; 
HG-U95 35442_at; 
HG-U95A 35442_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2383012;  2458544;  2458545;  2458546;  2458547;  2458548;  2458549;  2458550;  2458552;  2458553;  2458554;  2458555; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
107 .. 107 C/T rs7515156 - 5'UTR
252 .. 252 G/A rs142373258 - 5'UTR
315 .. 315 G/A rs200544450 - 5'UTR
324 .. 324 G/C rs199684462 - 5'UTR
326 .. 326 G/C rs78657537 - 5'UTR
346 .. 346 C/T rs185498164 - 5'UTR
465 .. 465 T/G rs180851088 - 5'UTR
608 .. 608 A/C rs4653696 - 5'UTR
616 .. 616 A/G rs141171561 - 5'UTR
668 .. 668 C/T rs116230906 - 5'UTR
740 .. 740 C/T rs74364671 - 5'UTR
741 .. 741 G/A rs77040739 - 5'UTR
909 .. 909 G/A rs150021070 - 5'UTR
920 .. 920 G/A rs139299671 - 5'UTR
958 .. 958 C/T rs188814888 - 5'UTR
1082 .. 1082 C/T rs360083 - 5'UTR
1274 .. 1274 A/G rs6426090 - 5'UTR
1286 .. 1286 C/A rs61835167 - 5'UTR
1339 .. 1339 G/A rs184088121 - 5'UTR
1448 .. 1448 C/T rs150778339 - 5'UTR
1596 .. 1596 T/A rs140623825 - 5'UTR
1603 .. 1603 C/G rs192860997 - 5'UTR
1764 .. 1764 T/C rs61295362 - 5'UTR
2377 .. 2377 G/A rs113592254 - CDS Nonsynonymous[Glu35Lys]
2387 .. 2387 C/T rs74229306 - CDS Nonsynonymous[Pro38Leu]
2441 .. 2441 G/A rs74150538 - CDS Nonsynonymous[Arg56His]
2456 .. 2456 G/T rs10158985 - CDS Nonsynonymous[Cys61Phe]
2459 .. 2459 T/C rs191210905 - CDS Nonsynonymous[Leu62Ser]
2479 .. 2479 C/T rs74150537 - CDS Nonsynonymous[Arg69Trp]
2480 .. 2480 G/A rs149280267 - CDS Nonsynonymous[Arg69Gln]
2517 .. 2517 C/T rs200715020 - CDS Synonymous[Asp81Asp]
2518 .. 2518 G/A rs115639846 - CDS Nonsynonymous[Ala82Thr]
2528 .. 2528 C/T rs201498073 - CDS Nonsynonymous[Thr85Met]
2540 .. 2540 T/C rs145694056 - CDS Nonsynonymous[Val89Ala]
2540 ^ 2541 -/T rs34475174 - CDS
2553 .. 2553 G/A rs114729361 - CDS Synonymous[Leu93Leu]
2562 .. 2562 C/T rs10915888 - CDS Synonymous[Asn96Asn]
2563 .. 2563 G/A rs140642925 - CDS Nonsynonymous[Val97Met]
2575 .. 2575 A/T rs138645976 - CDS Nonsynonymous[Ile101Phe]
2654 .. 2654 G/A rs116456190 - CDS Nonsynonymous[Arg127Gln]
2675 .. 2675 C/G rs141742746 - CDS Nonsynonymous[Pro134Arg]
2713 .. 2713 G/A rs116516791 - CDS Nonsynonymous[Glu147Lys]
2719 .. 2719 G/A rs115452233 - CDS Nonsynonymous[Glu149Lys]
2787 .. 2787 C/G rs201548552 - CDS Synonymous[Arg171Arg]
2841 .. 2841 C/T rs191286059 - CDS Synonymous[Ser189Ser]
2861 .. 2861 A/G rs74150536 - 3'UTR
3046 .. 3046 T/G rs188410667 - 3'UTR
3122 .. 3122 C/T rs360080 - 3'UTR
3274 .. 3274 T/G rs199522961 - 3'UTR
3274 .. 3275 TG/- rs79418252 - 3'UTR
3303 .. 3303 G/A rs183662735 - 3'UTR
3338 ^ 3339 -/C rs3835534 - 3'UTR
3339 ^ 3340 -/C rs140217892 - 3'UTR
3459 .. 3459 C/T rs3766937 - 3'UTR
3516 .. 3516 C/T rs191197154 - 3'UTR
3696 .. 3696 A/C rs59728172 - 3'UTR
3930 .. 3930 A/T rs186392594 - 3'UTR
3934 .. 3934 C/T rs145189128 - 3'UTR
3939 .. 3939 C/T rs141420683 - 3'UTR
4024 .. 4024 T/-/G rs3215221 - 3'UTR
4024 .. 4024 T/G rs74150534 - 3'UTR
4089 .. 4089 A/G rs116013256 - 3'UTR
4091 .. 4091 G/A rs146601568 - 3'UTR
4135 .. 4135 G/A rs201787923 - 3'UTR
4158 .. 4158 A/G rs114853295 - 3'UTR
4501 .. 4501 C/T rs151046341 - 3'UTR
4540 .. 4540 A/G rs142776653 - 3'UTR
4561 ^ 4562 -/CAGT rs67978574 - 3'UTR
4562 ^ 4563 -/CAGT rs60465512 - 3'UTR
4563 ^ 4564 -/GTCA rs67843114 - 3'UTR
4564 ^ 4565 -/GTCA rs144799603 - 3'UTR
4689 .. 4689 C/T rs12079891 - 3'UTR
4855 .. 4855 C/T rs180978785 - 3'UTR
4882 .. 4882 C/T rs12406755 - 3'UTR
5060 .. 5060 C/T rs34804481 - 3'UTR
5099 .. 5099 A/G rs189944871 - 3'UTR
5224 .. 5224 G/A rs148960009 - 3'UTR
5306 .. 5306 C/T rs73127764 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluJo 1065 1373 -
MamRep434 1384 1751 +
L2a 1815 1978 +
MIR 2043 2255 +
AluJr 2267 2312 +
MIRb 3823 3933 +
MER33 4418 4703 -
AluSx 5124 5405 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;