H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000000479 Accession number: AB018297 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Uncharacterized protein KIAA0754;
 
 

Transcript original information
Accession number AB018297.2
CAGE tag ID NA
EST ID NA
Clone Number hh06485
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (KIAA0754) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (KIAA0754);
Sequence data provider Provider:KDRI
Annotation project H-Invitational FLcDNA
Length of cDNA 5460[bp] (No. of exon:1)[A:1380 T:1376 G:1348 C:1356]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage adult
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0000455
Genomic location  G-integra Help Chromosome 1
Location 1p34.3
Position 39876695- 39882154
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:643314
KEGG GENES KEGG GENES(643314)
GeneCard GeneCardKIAA0754*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000010006
Predicted CDS 3..3527;  1174[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.749

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000000479
H-Inv cluster ID Locus viewHIX0000455
Accession number AB018297.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Uncharacterized protein KIAA0754;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O94854)  [Identity/coverage = 100.0%/90.94%] to Homo sapiens (Human). protein.
Experimental evidence NA
PubMed ID 9872452121689541470203916710414170819831969033220068231ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol KIAA0754
HGNC aliases NA
HGNC name KIAA0754
DDBJ KIAA0754
UniProt KIAA0754
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000010006
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:643314
KEGG GENES KEGG GENES(643314)
GeneCard GeneCardKIAA0754*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol;  mitochondria; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsC050106; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 215268_at; 
HG-U133A 215268_at; 
HG-U133A_2 215268_at; 
HG-U133B NA
HG-U133_Plus_2 215268_at; 
HG-U95 31909_at; 
HG-U95A 31909_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2331413;  2331414;  2331415;  2331416;  2331417;  2331418;  2407887; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P912372; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
22 .. 22 C/T rs141259269 + CDS Nonsynonymous[Pro7Leu]
233 .. 233 G/T rs188406793 + CDS Nonsynonymous[Met77Ile]
240 .. 240 G/A rs200887837 + CDS Nonsynonymous[Glu80Lys]
359 .. 359 G/A rs150760218 + CDS Synonymous[Val119Val]
488 .. 488 C/T rs192682381 + CDS Synonymous[Pro162Pro]
528 .. 528 G/A rs184690499 + CDS Nonsynonymous[Gly176Ser]
698 .. 698 G/A rs200415167 + CDS Synonymous[Glu232Glu]
761 .. 761 A/T rs112059370 + CDS Synonymous[Val253Val]
768 .. 768 C/T rs201874382 + CDS Nonsynonymous[His256Tyr]
801 .. 801 C/T rs61073427 + CDS Nonsynonymous[His267Tyr]
820 .. 820 T/C rs190023668 + CDS Nonsynonymous[Val273Ala]
880 .. 880 C/T rs35152805 + CDS Nonsynonymous[Ser293Phe]
1089 .. 1089 T/C rs143702095 + CDS Synonymous[Leu363Leu]
1135 .. 1135 T/C rs113364091 + CDS Nonsynonymous[Leu378Ser]
1141 .. 1141 A/G rs113273786 + CDS Nonsynonymous[Gln380Arg]
1321 .. 1321 A/G rs147147341 + CDS Nonsynonymous[Gln440Arg]
1387 .. 1387 G/A rs201734236 + CDS Nonsynonymous[Cys462Tyr]
1395 .. 1395 G/A rs199527234 + CDS Nonsynonymous[Asp465Asn]
1460 .. 1460 C/T rs181416924 + CDS Synonymous[Phe486Phe]
1474 .. 1474 C/T rs202020434 + CDS Nonsynonymous[Pro491Leu]
1478 .. 1478 G/A rs12141765 + CDS Synonymous[Glu492Glu]
1501 .. 1501 G/A rs200761968 + CDS Nonsynonymous[Arg500Lys]
1599 .. 1599 G/T rs184769240 + CDS AA-STOP[Glu533*]
1617 .. 1617 T/G rs201767401 + CDS Nonsynonymous[Ser539Ala]
1719 .. 1719 G/A rs140280687 + CDS Nonsynonymous[Glu573Lys]
1720 .. 1720 A/C rs200556320 + CDS Nonsynonymous[Glu573Ala]
1731 .. 1731 G/A rs201718916 + CDS Nonsynonymous[Val577Ile]
1749 .. 1749 C/T rs144350483 + CDS Nonsynonymous[Arg583Trp]
1785 .. 1785 G/T rs680528 + CDS Nonsynonymous[Asp595Tyr]
1791 .. 1791 G/A rs201118698 + CDS Nonsynonymous[Ala597Thr]
1873 .. 1873 C/A/G rs74066781 + CDS
1905 .. 1905 A/G rs199819105 + CDS Nonsynonymous[Ile635Val]
2047 .. 2047 C/G rs145511340 + CDS Nonsynonymous[Ala682Gly]
2091 .. 2091 G/A rs201860546 + CDS Nonsynonymous[Gly697Arg]
2121 .. 2121 A/G rs1746842 + CDS Nonsynonymous[Ile707Val]
2199 .. 2199 G/A rs72928320 + CDS Nonsynonymous[Glu733Lys]
2244 .. 2244 G/A rs201946343 + CDS Nonsynonymous[Ala748Thr]
2283 .. 2283 A/G rs783821 + CDS Nonsynonymous[Thr761Ala]
2346 .. 2346 C/A rs710914 - CDS Nonsynonymous[Pro782Thr]
2400 .. 2400 A/G rs12726050 + CDS Nonsynonymous[Thr800Ala]
2421 .. 2421 C/T rs12744643 + CDS Nonsynonymous[Pro807Ser]
2490 .. 2490 G/C rs12743694 + CDS Nonsynonymous[Ala830Pro]
2523 .. 2523 C/G rs12744796 + CDS Nonsynonymous[Pro841Ala]
2530 .. 2530 C/T rs12744800 + CDS Nonsynonymous[Ala843Val]
2546 .. 2546 A/C rs12726231 + CDS Synonymous[Pro848Pro]
2556 .. 2556 A/G rs783822 + CDS Nonsynonymous[Thr852Ala]
2623 .. 2623 C/T rs12744961 + CDS Nonsynonymous[Pro874Leu]
2624 .. 2624 A/G rs12726381 + CDS Synonymous[Pro874Pro]
2630 .. 2630 G/A rs12743880 + CDS Synonymous[Glu876Glu]
2634 .. 2634 G/A rs200402688 + CDS Nonsynonymous[Ala878Thr]
2646 .. 2646 G/C rs141110458 + CDS Nonsynonymous[Ala882Pro]
2672 .. 2672 T/C rs604316 + CDS Synonymous[Pro890Pro]
2677 .. 2677 T/C rs2797379 + CDS Nonsynonymous[Phe892Ser]
2685 .. 2685 C/G rs34074681 + CDS Nonsynonymous[Pro895Ala]
2718 .. 2718 G/C rs55976345 + CDS Nonsynonymous[Ala906Pro]
2725 .. 2725 T/C rs201613510 + CDS Nonsynonymous[Val908Ala]
2741 .. 2741 C/A rs112569629 + CDS Synonymous[Pro913Pro]
2823 .. 2823 G/A rs587523 + CDS Nonsynonymous[Glu941Lys]
2896 .. 2896 C/T rs140506518 + CDS Nonsynonymous[Pro965Leu]
3074 .. 3074 C/A rs180964189 + CDS Synonymous[Pro1024Pro]
3159 .. 3159 G/C rs201381740 + CDS Nonsynonymous[Ala1053Pro]
3167 ^ 3168 -/C rs34754112 + CDS
3206 .. 3206 C/G rs72928322 + CDS Nonsynonymous[Ile1068Met]
3211 .. 3211 C/T rs200814881 + CDS Nonsynonymous[Ala1070Val]
3284 .. 3284 C/T rs138223166 + CDS Synonymous[Asp1094Asp]
3319 .. 3319 T/C rs74066782 + CDS Nonsynonymous[Leu1106Pro]
3325 .. 3325 A/C rs78342613 + CDS Nonsynonymous[Glu1108Ala]
3409 .. 3409 A/T rs185907284 + CDS Nonsynonymous[His1136Leu]
3573 .. 3573 G/A rs56278340 + 3'UTR
3580 .. 3580 A/G rs783823 + 3'UTR
3585 .. 3585 G/C rs190039579 + 3'UTR
3625 .. 3625 T/G rs3768302 + 3'UTR
3661 .. 3661 G/A rs181292979 + 3'UTR
3735 .. 3735 T/C rs143562502 + 3'UTR
3987 .. 3987 G/A rs118058542 + 3'UTR
4032 .. 4032 A/C rs186353098 + 3'UTR
4071 .. 4071 G/A rs783824 - 3'UTR
4096 .. 4096 A/C rs190708706 + 3'UTR
4124 .. 4124 G/A rs11206031 + 3'UTR
4198 .. 4198 C/A rs77157953 + 3'UTR
4318 .. 4318 T/A rs72928324 + 3'UTR
4346 .. 4346 G/C rs1180375 + 3'UTR
4376 .. 4376 C/T rs143765499 + 3'UTR
4471 .. 4471 G/A rs61636308 + 3'UTR
4534 .. 4534 T/C rs182937351 + 3'UTR
4638 .. 4638 C/T rs72661973 + 3'UTR
4639 .. 4639 G/A rs201393675 - 3'UTR
4774 .. 4774 T/A rs17343193 + 3'UTR
4806 .. 4806 G/A rs111406271 + 3'UTR
4830 .. 4830 C/T rs113212425 + 3'UTR
5047 .. 5047 C/A rs138694483 + 3'UTR
5307 .. 5307 C/G rs653064 + 3'UTR
5391 .. 5391 G/A rs79296035 + 3'UTR
5433 .. 5433 G/A rs12759845 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 3835 3989 +
MIR3 4174 4303 +
AluY 4304 4638 -
MIR3 4639 4652 +
L2a 4844 4925 +
AluJr 5344 5457 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer