H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000001653_02 Accession number: AB067525 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Zinc finger and BTB domain-containing protein 9;
 
 

Transcript original information
Accession number AB067525.2
CAGE tag ID NA
EST ID NA
Clone Number hg00912s1
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ZBTB9) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ZBTB9);
Sequence data provider Provider:KDRI
Annotation project H-Invitational FLcDNA
Length of cDNA 9768[bp] (No. of exon:19)[A:2041 T:2172 G:2626 C:2929]
Devision NA
Molecular type NA
Library origin Cell type NA
Tissue type brain
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0005779
Genomic location  G-integra Help Chromosome 6
Location 6p21.32
Position 33387941- 33425318
Strand +
Possible duplicated location(s) HIX0187033; 
Gene structure 19 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardZBTB9*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000051278
Predicted CDS 7328..8749;  473[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.761
Database links RefSeq NP_689948
UniProt Q96C00
CCDS CCDS4780

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000001653_02
H-Inv cluster ID Locus viewHIX0005779
Accession number AB067525.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Zinc finger and BTB domain-containing protein 9;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96C00)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 14574404147020391548933418669648ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ZBTB9
HGNC aliases NA
HGNC name zinc finger and BTB domain containing 9
DDBJ KIAA1938
UniProt ZBTB9
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000051278
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardZBTB9*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Rattus sp. (Rat) AF048976 G-integraG-integra
Orthology Equus sp. (Horse) ENSECAT00000022331 G-integraG-integra
Orthology Macaca sp. (Macaque) ENSMMUT00000014908 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000003989 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000020322 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000019190 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00017387001 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00019525001 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000127646 G-integraG-integra
Orthology Bos sp. (Cow) XM_001256819 G-integraG-integra
Orthology Canis sp. (Dog) XM_538863 G-integraG-integra
Orthology Danio sp. (Zebrafish) XM_685791 G-integraG-integra
Orthology Mus sp. (Mouse) XM_915205 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XR_021334 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
18 .. 18 A/T rs189031463 + 5'UTR
29 .. 29 C/T rs399463 + 5'UTR
31 .. 31 T/C rs192610445 + 5'UTR
34 .. 34 C/- rs35165086 + 5'UTR
74 .. 74 G/C rs432615 + 5'UTR
185 .. 185 T/C rs142359891 + 5'UTR
203 .. 203 C/T rs147913000 + 5'UTR
299 .. 299 C/T rs73402305 + 5'UTR
317 .. 317 G/C rs200068811 + 5'UTR
329 .. 329 C/T rs147049139 + 5'UTR
480 .. 480 C/T rs192116921 + 5'UTR
512 .. 512 A/- rs34885339 + 5'UTR
513 .. 513 A/T rs121918315 + 5'UTR
602 .. 602 C/T rs138286163 + 5'UTR
615 .. 615 C/T rs142649710 + 5'UTR
687 .. 687 T/C rs145694123 + 5'UTR
813 .. 813 G/A rs138903637 + 5'UTR
932 .. 932 G/A rs149394351 + 5'UTR
1141 .. 1141 C/A rs201787289 + 5'UTR
1167 .. 1167 C/T rs144778033 + 5'UTR
1299 .. 1299 G/C rs201020155 + 5'UTR
1310 .. 1310 A/G rs185407862 + 5'UTR
1399 .. 1399 C/T rs200213875 + 5'UTR
1525 .. 1525 G/A rs138609496 + 5'UTR
1556 .. 1556 C/T rs201107225 + 5'UTR
1581 .. 1581 A/G rs202049695 + 5'UTR
1592 .. 1592 T/C rs72887798 + 5'UTR
1637 .. 1637 A/G rs7759963 + 5'UTR
1676 .. 1676 G/A rs139050190 + 5'UTR
1682 .. 1682 C/T rs202178663 + 5'UTR
1757 .. 1757 C/T rs142692732 + 5'UTR
1814 .. 1814 G/A rs411136 - 5'UTR
1836 .. 1836 C/T rs121918316 + 5'UTR
1877 .. 1877 A/G rs150153477 + 5'UTR
1904 .. 1904 G/A rs77934848 + 5'UTR
1913 .. 1913 G/A rs149727287 + 5'UTR
1952 .. 1952 A/G rs75579703 + 5'UTR
1985 .. 1985 G/A rs140022772 + 5'UTR
1989 .. 1989 A/G rs192497085 + 5'UTR
2036 .. 2036 T/C rs145406441 + 5'UTR
2117 .. 2117 G/A rs57365292 + 5'UTR
2148 .. 2148 A/G rs147668681 + 5'UTR
2219 .. 2219 A/G rs149131236 + 5'UTR
2222 .. 2222 C/T rs143401233 + 5'UTR
2308 .. 2308 G/A rs151334677 + 5'UTR
2417 .. 2417 C/T rs182565988 + 5'UTR
2435 .. 2435 C/T rs199759879 + 5'UTR
2440 .. 2440 C/G rs140592564 + 5'UTR
2455 .. 2455 G/C rs202023175 + 5'UTR
2463 .. 2463 T/C rs201062426 + 5'UTR
2489 .. 2489 A/C rs145844559 + 5'UTR
2495 .. 2495 G/A/T rs138404495 + 5'UTR
2513 .. 2513 C/T rs141645280 + 5'UTR
2567 .. 2567 G/A rs145297490 + 5'UTR
2669 .. 2669 C/T rs137894267 + 5'UTR
2759 .. 2759 G/A rs149467343 + 5'UTR
2796 .. 2796 A/G rs143862418 + 5'UTR
2805 .. 2805 G/A rs148703943 + 5'UTR
2946 .. 2946 G/A rs141341400 + 5'UTR
2957 .. 2957 C/T rs147407494 + 5'UTR
3044 .. 3044 C/T rs202074092 + 5'UTR
3071 .. 3071 C/T rs61421477 + 5'UTR
3072 .. 3072 G/A rs145472959 + 5'UTR
3179 .. 3179 C/A rs147684240 + 5'UTR
3235 .. 3235 C/G rs139759084 + 5'UTR
3243 .. 3243 G/T rs11756959 + 5'UTR
3338 .. 3338 C/A rs149779350 + 5'UTR
3374 .. 3374 A/G rs145707539 + 5'UTR
3398 .. 3398 T/C rs149016890 + 5'UTR
3425 .. 3425 C/- rs35337985 + 5'UTR
3425 .. 3425 C/T rs139841529 + 5'UTR
3445 .. 3445 T/C rs191549504 + 5'UTR
3596 .. 3596 G/A rs200386206 + 5'UTR
3601 .. 3601 A/G rs112387978 + 5'UTR
3735 .. 3735 T/C rs112764125 + 5'UTR
3884 .. 3884 C/T rs202136046 + 5'UTR
3959 .. 3959 A/T rs139853969 + 5'UTR
4003 .. 4003 C/G rs199694815 + 5'UTR
4103 .. 4103 C/T rs201509029 + 5'UTR
4274 .. 4274 C/T rs186837972 + 5'UTR
4321 .. 4321 C/T rs138935161 + 5'UTR
4345 .. 4345 G/A rs149438267 + 5'UTR
4387 .. 4387 C/T rs56250036 + 5'UTR
4737 .. 4737 G/T rs13214818 + 5'UTR
5092 .. 5092 G/A rs113985177 + 5'UTR
5214 .. 5214 C/T rs115953368 + 5'UTR
5352 .. 5352 C/G rs146399784 + 5'UTR
5439 .. 5439 C/G rs139658874 + 5'UTR
5459 .. 5459 T/C rs116313386 + 5'UTR
5984 .. 5984 G/A rs183076227 + 5'UTR
6003 .. 6003 G/A rs2772386 - 5'UTR
6027 .. 6027 T/C rs2247385 - 5'UTR
6118 .. 6118 A/G rs187798431 + 5'UTR
6173 .. 6173 G/A rs2274731 - 5'UTR
6193 .. 6193 A/G rs191238830 + 5'UTR
6279 .. 6279 A/G rs6940367 + 5'UTR
6283 .. 6283 G/A rs41271245 + 5'UTR
6424 .. 6425 CA/- rs74628799 + 5'UTR
6570 .. 6570 C/A rs117529813 + 5'UTR
6600 .. 6600 G/T rs2772385 + 5'UTR
6695 .. 6695 G/A rs183026120 + 5'UTR
6760 .. 6760 T/C rs199785873 + 5'UTR
6788 .. 6788 C/T rs144407262 + 5'UTR
6791 .. 6791 C/G rs79215636 + 5'UTR
6995 .. 6995 G/C rs2274730 - 5'UTR
7056 .. 7056 G/A rs79634261 + 5'UTR
7071 .. 7071 G/A rs187884720 + 5'UTR
7100 .. 7100 G/T rs201714485 - 5'UTR
7145 ^ 7146 -/C rs145306144 + 5'UTR
7224 .. 7224 G/A rs146198158 + 5'UTR
7358 .. 7358 C/T rs146607540 + CDS Nonsynonymous[Pro11Ser]
7362 .. 7362 C/T rs141334348 + CDS Nonsynonymous[Ala12Val]
7366 .. 7366 C/T rs145101783 + CDS Synonymous[Ser13Ser]
7380 .. 7380 C/G rs200069500 + CDS Nonsynonymous[Pro18Arg]
7426 .. 7426 G/T rs3119025 + CDS Synonymous[Ser33Ser]
7454 .. 7454 C/G rs41267651 + CDS Nonsynonymous[Leu43Val]
7517 .. 7517 G/A rs150099333 + CDS Nonsynonymous[Ala64Thr]
7559 .. 7559 C/T rs199732782 + CDS Nonsynonymous[Leu78Phe]
7593 .. 7593 G/C rs148441009 + CDS Nonsynonymous[Ser89Thr]
7603 .. 7603 A/G rs34783180 + CDS Synonymous[Glu92Glu]
7650 .. 7650 T/C rs200550865 + CDS Nonsynonymous[Leu108Pro]
7652 .. 7652 C/T rs201435440 + CDS Nonsynonymous[Arg109Cys]
7653 .. 7653 G/C rs199527469 + CDS Nonsynonymous[Arg109Pro]
7722 .. 7722 A/G rs147424141 + CDS Nonsynonymous[Asp132Gly]
7729 .. 7729 C/T rs9380354 + CDS Synonymous[Cys134Cys]
7761 .. 7761 G/A rs201509071 + CDS Nonsynonymous[Gly145Asp]
7775 .. 7775 G/A rs115239208 + CDS Nonsynonymous[Ala150Thr]
7779 .. 7779 G/A rs201031785 + CDS Nonsynonymous[Arg151His]
7791 .. 7791 C/T rs150940874 + CDS Nonsynonymous[Ser155Phe]
7821 .. 7821 C/T rs200166902 + CDS Nonsynonymous[Ser165Phe]
7829 .. 7829 G/A rs143664025 + CDS Nonsynonymous[Gly168Ser]
7845 .. 7845 C/G rs147186666 + CDS Nonsynonymous[Ser173Cys]
7996 .. 7996 T/G rs148756189 + CDS Nonsynonymous[Asp223Glu]
8037 .. 8037 C/T rs112713415 + CDS Nonsynonymous[Pro237Leu]
8066 .. 8066 C/T rs142334637 + CDS Nonsynonymous[Pro247Ser]
8129 .. 8129 G/C rs150826464 + CDS Nonsynonymous[Ala268Pro]
8148 .. 8148 C/G rs9469425 + CDS Nonsynonymous[Ala274Gly]
8151 .. 8151 C/G rs200956170 + CDS Nonsynonymous[Pro275Arg]
8159 .. 8159 C/T rs144528340 + CDS Synonymous[Leu278Leu]
8175 .. 8175 T/G rs146625189 + CDS Nonsynonymous[Phe283Cys]
8239 .. 8239 A/G rs141406548 + CDS Synonymous[Gly304Gly]
8320 .. 8320 G/A rs143849363 + CDS Synonymous[Gly331Gly]
8348 .. 8348 C/T rs200435437 + CDS Nonsynonymous[Pro341Ser]
8415 .. 8415 C/T rs201118500 + CDS Nonsynonymous[Ala363Val]
8425 .. 8425 C/T rs145809824 + CDS Synonymous[Ala366Ala]
8599 .. 8599 C/T rs3827803 + CDS Synonymous[His424His]
8983 .. 8983 T/C rs192163582 + 3'UTR
9068 ^ 9069 -/T rs34517648 + 3'UTR
9095 .. 9095 A/T rs140872920 + 3'UTR
9100 .. 9100 C/T rs184748747 + 3'UTR
9213 .. 9213 T/C rs189643034 + 3'UTR
9328 .. 9328 C/G rs180786994 + 3'UTR
9419 .. 9419 A/C rs201980155 + 3'UTR
9451 .. 9451 C/A rs114055571 + 3'UTR
9608 .. 9608 T/C rs147854469 + 3'UTR
9740 .. 9740 A/T rs186223775 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer