H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000002412 Accession number: AF255647 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AF255647.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TMEM163) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TMEM163);
Sequence data provider Provider:CHGC
Annotation project H-Invitational FLcDNA
Length of cDNA 924[bp] (No. of exon:1)[A:227 T:286 G:193 C:218]
Devision HUM
Molecular type mRNA
Library origin Cell type dentritic
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002470
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135213333- 135214254
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81615
KEGG GENES KEGG GENES(81615)
GeneCard GeneCardTMEM163*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000110178
Predicted CDS 76..489;  137[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.733

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000002412
H-Inv cluster ID Locus viewHIX0002470
Accession number AF255647.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TMEM163
HGNC aliases NA
HGNC name transmembrane protein 163
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000110178
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81615
KEGG GENES KEGG GENES(81615)
GeneCard GeneCardTMEM163*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol;  peroxisome;  Other; 
Target P Not predicted
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsC021412; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 223503_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 223503_at; 
HG-U133_Plus_2 1552626_a_at;  223503_at; 
HG-U95 59392_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 59392_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507082;  2577493;  2577494;  2577495; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P39550; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P39550; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
18 .. 18 G/C rs149299659 - 5'UTR
152 .. 152 A/G rs6724303 - CDS Nonsynonymous[Lys26Arg]
193 .. 193 C/T rs187903520 - CDS Nonsynonymous[Arg40Cys]
212 .. 212 C/T rs2289469 - CDS Nonsynonymous[Ala46Val]
218 ^ 219 -/T rs3214699 - CDS
219 ^ 220 -/T rs113761636 - CDS
237 .. 237 G/T rs78198285 - CDS Nonsynonymous[Met54Ile]
338 .. 338 G/T rs183395656 - CDS Nonsynonymous[Gly88Val]
462 .. 462 A/G rs207462403 - CDS Synonymous[Val129Val]
494 .. 494 A/G rs610624 + 3'UTR
574 .. 574 C/T rs138659461 - 3'UTR
594 .. 594 A/G rs145982460 - 3'UTR
741 .. 741 G/- rs3214698 - 3'UTR
768 .. 768 C/T rs142433649 - 3'UTR
769 .. 769 G/A rs137901162 - 3'UTR
826 .. 826 G/A rs77752922 - 3'UTR
844 .. 844 C/T rs620364 + 3'UTR
850 .. 850 G/A rs192732240 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer