H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Invitational ID:
HIT000002412
Accession number:
AF255647
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AF255647.1
CAGE tag ID
NA
EST ID
NA
Clone Number
NA
Experimental resources
NBRC
;
HGPD
;
Antibody (TMEM163)
;
Catalog (TMEM163)
;
Sequence data provider
Provider:
CHGC
;
Annotation project
H-Invitational FLcDNA
Length of cDNA
924[bp] (No. of exon:1)[A:227 T:286 G:193 C:218]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
dentritic
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TGAGGAGTTTCCACATAGGCAAAGGGTGCCAATATTTAACTGACATCTGG TTTCTTTTTGGAAGTTTTCTTTCACATGGTTTGTCATTACAAGACAAGGT CTGCCCAGCCAGGTGGATCTACCTTGCCCCCATCACCTGCCGCCCCCATC AAACATGTTGGGACAATGCCCATAGGAATGGACCTCCTTCCCCGTCTCCA GCTGGGACTGGCGTTTTTTAGTCTCTGGAGTATGATGGTTCTCATGGGTA GGATGAGATCTTTCGGCAGAAAGGTCTTCGGTGGTGCTCTGAGCCTGCGC TGCATAGGACTGAGCAGACCCACCTCCTCCAGCTTGGGTGGCCCTGCCAC TCCTGGTTCCAAGTCTCTCCTTTCCTGGCAGGTCTTAAGGGAAGATTGTA CCCCCTCACCCTTTACATACCCAGAATCATCAGTATGTCACTTCCTAATT TCTATCAGTGTATCTCATTATTTCATACTGTTTTACTAATCCTAAGTCTA AACAGATTTGCTCAAAAGGAGACCATTCTATTTTTTAAAGTACTTAGTGA TACACGTATAAGCTTTGCATGGACGAATTAAATAAGCACATTGACCTTTT CTTGTACATTCAGAACCTGAACATCCATGTGAAAACTGGGTCCATTTTTG AGAGATGTGAAACTACAGTTTATTTGTAATAAATAAATATAATCTATCCG GTATATGCATATATCTATATGCTGTGTTAAGTGGTAATGGGTACATTACA GTCTGTGAGAGATGGATCGCTCCCTCTGTAAGGAACAAGACGTTCTCAGC TGATGTCACGGTAGGTTTAGATTCTGTAGAGTGTTCCCCAACCCGCACCG TTCTGTACCTCTCACACCACTGCTTGCCCGGGCAGTAGTGGCTGACCAAT AAAGACCTTTACCTGTTTTGTATG
Gene structure information
H-Inv cluster ID
HIX0002470
Genomic location
Chromosome
2
Location
2q21.3
Position
135213333- 135214254
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81615
;
KEGG GENES
KEGG GENES(81615)
;
GeneCard
TMEM163
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000110178
Predicted CDS
76..489; 137[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.733
MVCHYKTRSAQPGGSTLPPSPAAPIKHVGTMPIGMDLLPRLQLGLAFFSL WSMMVLMGRMRSFGRKVFGGALSLRCIGLSRPTSSSLGGPATPGSKSLLS WQVLREDCTPSPFTYPESSVCHFLISISVSHYFILFY*
Gene function information
H-Inv ID
HIT000002412
H-Inv cluster ID
HIX0002470
Accession number
AF255647.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
TMEM163
HGNC aliases
NA
HGNC name
transmembrane protein 163
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000110178
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81615
;
KEGG GENES
KEGG GENES(81615)
;
GeneCard
TMEM163
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; nuclear; cytosol; peroxisome; Other;
Target P
Not predicted
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsC021412;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
223503_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
223503_at;
HG-U133_Plus_2
1552626_a_at; 223503_at;
HG-U95
59392_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
59392_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2507082; 2577493; 2577494; 2577495;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P39550;
Whole Human Genome Oligo Microarray:PGID247
A_23_P39550;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
18 .. 18
G/C
rs149299659
-
5'UTR
152 .. 152
A/G
rs6724303
-
CDS
Nonsynonymous[Lys26Arg]
193 .. 193
C/T
rs187903520
-
CDS
Nonsynonymous[Arg40Cys]
212 .. 212
C/T
rs2289469
-
CDS
Nonsynonymous[Ala46Val]
218 ^ 219
-/T
rs3214699
-
CDS
219 ^ 220
-/T
rs113761636
-
CDS
237 .. 237
G/T
rs78198285
-
CDS
Nonsynonymous[Met54Ile]
338 .. 338
G/T
rs183395656
-
CDS
Nonsynonymous[Gly88Val]
462 .. 462
A/G
rs207462403
-
CDS
Synonymous[Val129Val]
494 .. 494
A/G
rs610624
+
3'UTR
574 .. 574
C/T
rs138659461
-
3'UTR
594 .. 594
A/G
rs145982460
-
3'UTR
741 .. 741
G/-
rs3214698
-
3'UTR
768 .. 768
C/T
rs142433649
-
3'UTR
769 .. 769
G/A
rs137901162
-
3'UTR
826 .. 826
G/A
rs77752922
-
3'UTR
844 .. 844
C/T
rs620364
+
3'UTR
850 .. 850
G/A
rs192732240
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;