H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000004651 Accession number: AK002177 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK002177.1
CAGE tag ID NA
EST ID NA
Clone Number PLACE1010148
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2005[bp] (No. of exon:2)[A:736 T:490 G:451 C:328]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted;  Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0016115
Genomic location  G-integra Help Chromosome 21
Location 21q22.2
Position 40568058- 40571409
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54014
KEGG GENES KEGG GENES(54014)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000437845
Predicted CDS 356..526;  56[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.75

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000004651
H-Inv cluster ID Locus viewHIX0016115
Accession number AK002177.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000437845
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54014
KEGG GENES KEGG GENES(54014)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT mitochondria;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA030323; 
Affymetrix
GeneChip
HG-Focus 219280_at; 
HG-U133 219280_at; 
HG-U133A 219280_at; 
HG-U133A_2 219280_at; 
HG-U133B NA
HG-U133_Plus_2 219280_at; 
HG-U95 72466_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 72466_at; 
HG-U95Av2 NA
HuEx-1_0 3932158;  3932159;  3932160;  3932161;  3932163;  3932164;  3932165; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P190541; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
62 .. 62 A/G rs139647798 - 5'UTR
138 .. 138 A/G rs149287073 - 5'UTR
151 .. 151 G/A rs146332659 - 5'UTR
162 .. 162 A/C rs181606658 - 5'UTR
164 .. 164 T/C rs1041439 - 5'UTR
171 .. 171 A/G rs140120132 - 5'UTR
184 .. 184 C/T rs144397759 - 5'UTR
208 .. 208 G/C rs4561736 - 5'UTR
247 .. 247 C/T rs149632627 - 5'UTR
257 .. 257 G/A rs138383027 - 5'UTR
269 .. 269 A/T rs150498517 - 5'UTR
291 .. 291 T/C rs143408393 - 5'UTR
347 .. 347 C/T rs138058799 - 5'UTR
391 .. 391 C/T rs202178838 - CDS Synonymous[Ala12Ala]
412 .. 412 C/T rs146953324 - CDS Synonymous[Asn19Asn]
447 .. 447 T/C rs117580155 - CDS Nonsynonymous[Leu31Pro]
451 .. 451 C/T rs186057504 - CDS Synonymous[Asn32Asn]
498 .. 498 G/A rs141349834 - CDS Nonsynonymous[Arg48Gln]
520 .. 520 A/G rs113760569 - CDS Synonymous[Arg55Arg]
521 ^ 522 -/T rs72220850 - CDS
523 ^ 524 -/T rs72451078 - CDS
549 .. 549 T/G rs190301905 - 3'UTR
580 .. 580 C/G rs2234547 + 3'UTR
641 .. 641 A/T rs147211854 - 3'UTR
673 .. 673 T/G rs118147046 - 3'UTR
697 .. 697 G/A rs143588079 - 3'UTR
751 .. 751 A/C rs145083729 - 3'UTR
759 ^ 760 -/TC rs72214959 - 3'UTR
772 .. 772 G/- rs67440758 - 3'UTR
853 .. 853 C/G rs201169453 - 3'UTR
869 .. 869 C/T rs145664878 - 3'UTR
870 .. 870 G/A rs140490336 - 3'UTR
908 .. 908 A/G rs192584384 - 3'UTR
961 .. 961 C/T rs61742658 - 3'UTR
1020 .. 1020 T/C rs113006527 - 3'UTR
1028 .. 1028 T/C rs113583698 - 3'UTR
1044 .. 1044 T/C rs143656914 - 3'UTR
1066 .. 1066 G/C rs139902450 - 3'UTR
1069 ^ 1070 -/C rs72459283 - 3'UTR
1078 .. 1078 G/A rs201905326 - 3'UTR
1090 .. 1090 A/G rs200091292 - 3'UTR
1181 .. 1181 T/C rs151076785 - 3'UTR
1187 .. 1187 C/A rs201620095 - 3'UTR
1216 .. 1216 A/G rs73357824 - 3'UTR
1247 ^ 1248 -/TC rs72339489 - 3'UTR
1279 ^ 1280 -/TA rs71917705 - 3'UTR
1292 .. 1292 T/C rs148595973 - 3'UTR
1293 .. 1293 G/T rs201811432 - 3'UTR
1298 .. 1298 A/C rs144838294 - 3'UTR
1375 .. 1375 A/G rs199862434 - 3'UTR
1377 .. 1377 C/G rs143446666 - 3'UTR
1418 .. 1418 A/G rs79210130 - 3'UTR
1422 .. 1422 A/G rs200814449 - 3'UTR
1434 .. 1434 A/G rs201011567 - 3'UTR
1446 .. 1446 A/G rs139419183 - 3'UTR
1455 .. 1455 G/A rs201608994 - 3'UTR
1461 .. 1461 G/A rs147384341 - 3'UTR
1486 .. 1486 A/C rs142727235 - 3'UTR
1502 ^ 1503 -/G rs66668848 - 3'UTR
1532 .. 1532 C/T rs138429907 - 3'UTR
1535 .. 1535 A/G rs2234548 + 3'UTR
1587 .. 1587 T/C rs141324249 - 3'UTR
1588 .. 1588 A/G rs141734528 - 3'UTR
1607 .. 1607 A/G rs200430927 - 3'UTR
1610 .. 1610 C/T rs148068634 - 3'UTR
1678 .. 1678 C/T rs145545969 - 3'UTR
1703 .. 1703 G/C rs9981359 - 3'UTR
1739 .. 1739 A/G rs201712356 - 3'UTR
1898 .. 1898 C/T rs146641835 - 3'UTR
1958 .. 1958 G/T rs200004870 + 3'UTR
1972 ^ 1973 -/G rs68171349 - 3'UTR
2004 .. 2004 T/C rs111597637 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer