H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000004651
Accession number:
AK002177
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK002177.1
CAGE tag ID
NA
EST ID
NA
Clone Number
PLACE1010148
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2005[bp] (No. of exon:2)[A:736 T:490 G:451 C:328]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
placenta
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NMD predicted; Truncation;
Notes
NA
GATGTAGAAGAGAATTCTAGCTCTGAAAGTGTCTGTTCTGGTCGGAAGCT GCCTCACCGCAATGCTTCTGCTGTAGCTAGAAAAAAGTTATTACATAATT CTGAAGATGAACAGAGCTTAAAGTCAGAAATTGAAGAAGAGGAGCTAAAA GATGAAAATCAACTATTACCAGTGTCCAGTTCTCACACTGCCCAGAGCAA TGTTGATGAATCTGAAAACAGAGACTCAGAGTCAGAAAGTGATTTGCGGG TAGCCCGGAAAAATTGGCATGCTAATGGTTACAAGTCCCATACTCCAGCA CCTTCAAAGACAAAATTTCTTAAAATAGAGTCTTCTGAGGAAGACTCTAA AAGTCATGATTCAGATCATGCATGTAACAGAACTGCTGGCCCATCAACGT CTGTGCAGAAACTTAAGGCAGAGAGCATCTCAGAGGAAGCAGATTCTGAA CCAGGAAGATCTGGTGGTAGGAAATACAATACATTTCACAAGAATGCGAG TTTCTTTAAAAAAACCAAGATTCTGAGTGACTCAGAAGACTCTGAATCTG AAGAGCAAGATAGAGAAGATGGGAAATGTCATAAAGTGGAAATGAACCCA ATTTCAGGAAATCTGAACTGTGACCCTATTGCTATGTCCCAGTGTTCCTC AGATCATGGATGTGAAACTGATTTAGATTCAGATGATGACAAAATAGAAA AACCAAACAATTTTATGAAAGATTCTGCATCACAAGACAATGGACTAAGC AGAAAAATTTCCAGGAAAAGGGTCTGTTCCAGTGACTCAGACAGTAGTTT ACAGGTGGTTAAGAAATCATCAAAAGCCAGAACAGGTCTCCTGAGGATTA CTCGAAGATGTGCAGCTACGGCTGCCAATAAGATCAAGCTCATGAGTGAT GTAGAAGATGTCAGTTTAGAAAATGTGCACACTAGAAGCAAAAATGGAAG GAAAAAACCTCTCCATCTTGCTTGTACTACAGCTAAGAAGAAATTGAGTG ATTGTGAAGGAAGTGTACATTGTGAAGTACCAAGTGAACAGTATGCCTGT GAAGGCAAGCCACCTGATCCTGACTCCGAAGGTAGTACAAAAGTGCTTAG TCAGGCTCTAAATGGAGACTCAGACTCTGAAGATATGTTGAATTCAGAAC ACAAGCACAGGCATACCAATATTCACAAAATAGATGCACCTTCTAAAAGA AAAAGTTCCTCTGTTACATCTTCAGGAGAAGATTCAAAAAGTCATATTCC AGGGAGTGAGACTGATAGGACATTTTCTTCAGAGTCAACCTTGGCACAAA AAGCTACTGCAGAGAATAATTTTGAAGTGGAACTGAATTATGGGCTGCGC AGGTGGAATGGCAGAAGACTCAGGACCTATGGAAAGGCTCCTTTTAGTAA GACAAAAGTGATTCATGATTCACAGGAAACAGCAGAGAAGGAAGTAAAAA GGAAGAGATCGCATCCTGGATTGGAAAATGTGAAAATCTCTGAAACAACT GGGAATTCAAAGTTTAGACCTGATACTAGTTCCAAATCATCAGATTTGGG ATCTGTAACTGAATCAGATATTGACTGTACTGATAATACAAAAACCAAAA GGAGGAAAACGAAAGGAAAAGCAAAAGTAGTTAGAAAAGGTAAAACTTTT ACAGCTAACATATCTAAAACTGTGAGACGTCAAAGACAAAGCAAACGCCC TAGGTTAAGTGTGGATGATAATGACTGGGAGGATTTGGACTATGCAAAAT CTAAAAGAGTTCTTCGACGTTCAAAAATAAAAACGAGAAATCAGGGTAGA AGGACTGTGAGATACCATGATGGGGATGATGACAGAAGTTTAGAAAATGT GTTAGATTTCAATGGTTGCACCTTATGACCTTGAGGGAAAGCCAGTTCAT TTAAGAGGAAATGGACTGGCATTTATGGTGAAAGCTGGCTGTTAAAATTA TTTTTTTGTCTTACAATTCAGGGAATATATTTATATTTTTCTATGAAAAG TTATG
Gene structure information
H-Inv cluster ID
HIX0016115
Genomic location
Chromosome
21
Location
21q22.2
Position
40568058- 40571409
Strand
-
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54014
;
KEGG GENES
KEGG GENES(54014)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000437845
Predicted CDS
356..526; 56[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.75
MIQIMHVTELLAHQRLCRNLRQRASQRKQILNQEDLVVGNTIHFTRMRVS LKKPRF*
Gene function information
H-Inv ID
HIT000004651
H-Inv cluster ID
HIX0016115
Accession number
AK002177.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000437845
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54014
;
KEGG GENES
KEGG GENES(54014)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
mitochondria; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA030323;
Affymetrix
GeneChip
HG-Focus
219280_at;
HG-U133
219280_at;
HG-U133A
219280_at;
HG-U133A_2
219280_at;
HG-U133B
NA
HG-U133_Plus_2
219280_at;
HG-U95
72466_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
72466_at;
HG-U95Av2
NA
HuEx-1_0
3932158; 3932159; 3932160; 3932161; 3932163; 3932164; 3932165;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_24_P190541;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
62 .. 62
A/G
rs139647798
-
5'UTR
138 .. 138
A/G
rs149287073
-
5'UTR
151 .. 151
G/A
rs146332659
-
5'UTR
162 .. 162
A/C
rs181606658
-
5'UTR
164 .. 164
T/C
rs1041439
-
5'UTR
171 .. 171
A/G
rs140120132
-
5'UTR
184 .. 184
C/T
rs144397759
-
5'UTR
208 .. 208
G/C
rs4561736
-
5'UTR
247 .. 247
C/T
rs149632627
-
5'UTR
257 .. 257
G/A
rs138383027
-
5'UTR
269 .. 269
A/T
rs150498517
-
5'UTR
291 .. 291
T/C
rs143408393
-
5'UTR
347 .. 347
C/T
rs138058799
-
5'UTR
391 .. 391
C/T
rs202178838
-
CDS
Synonymous[Ala12Ala]
412 .. 412
C/T
rs146953324
-
CDS
Synonymous[Asn19Asn]
447 .. 447
T/C
rs117580155
-
CDS
Nonsynonymous[Leu31Pro]
451 .. 451
C/T
rs186057504
-
CDS
Synonymous[Asn32Asn]
498 .. 498
G/A
rs141349834
-
CDS
Nonsynonymous[Arg48Gln]
520 .. 520
A/G
rs113760569
-
CDS
Synonymous[Arg55Arg]
521 ^ 522
-/T
rs72220850
-
CDS
523 ^ 524
-/T
rs72451078
-
CDS
549 .. 549
T/G
rs190301905
-
3'UTR
580 .. 580
C/G
rs2234547
+
3'UTR
641 .. 641
A/T
rs147211854
-
3'UTR
673 .. 673
T/G
rs118147046
-
3'UTR
697 .. 697
G/A
rs143588079
-
3'UTR
751 .. 751
A/C
rs145083729
-
3'UTR
759 ^ 760
-/TC
rs72214959
-
3'UTR
772 .. 772
G/-
rs67440758
-
3'UTR
853 .. 853
C/G
rs201169453
-
3'UTR
869 .. 869
C/T
rs145664878
-
3'UTR
870 .. 870
G/A
rs140490336
-
3'UTR
908 .. 908
A/G
rs192584384
-
3'UTR
961 .. 961
C/T
rs61742658
-
3'UTR
1020 .. 1020
T/C
rs113006527
-
3'UTR
1028 .. 1028
T/C
rs113583698
-
3'UTR
1044 .. 1044
T/C
rs143656914
-
3'UTR
1066 .. 1066
G/C
rs139902450
-
3'UTR
1069 ^ 1070
-/C
rs72459283
-
3'UTR
1078 .. 1078
G/A
rs201905326
-
3'UTR
1090 .. 1090
A/G
rs200091292
-
3'UTR
1181 .. 1181
T/C
rs151076785
-
3'UTR
1187 .. 1187
C/A
rs201620095
-
3'UTR
1216 .. 1216
A/G
rs73357824
-
3'UTR
1247 ^ 1248
-/TC
rs72339489
-
3'UTR
1279 ^ 1280
-/TA
rs71917705
-
3'UTR
1292 .. 1292
T/C
rs148595973
-
3'UTR
1293 .. 1293
G/T
rs201811432
-
3'UTR
1298 .. 1298
A/C
rs144838294
-
3'UTR
1375 .. 1375
A/G
rs199862434
-
3'UTR
1377 .. 1377
C/G
rs143446666
-
3'UTR
1418 .. 1418
A/G
rs79210130
-
3'UTR
1422 .. 1422
A/G
rs200814449
-
3'UTR
1434 .. 1434
A/G
rs201011567
-
3'UTR
1446 .. 1446
A/G
rs139419183
-
3'UTR
1455 .. 1455
G/A
rs201608994
-
3'UTR
1461 .. 1461
G/A
rs147384341
-
3'UTR
1486 .. 1486
A/C
rs142727235
-
3'UTR
1502 ^ 1503
-/G
rs66668848
-
3'UTR
1532 .. 1532
C/T
rs138429907
-
3'UTR
1535 .. 1535
A/G
rs2234548
+
3'UTR
1587 .. 1587
T/C
rs141324249
-
3'UTR
1588 .. 1588
A/G
rs141734528
-
3'UTR
1607 .. 1607
A/G
rs200430927
-
3'UTR
1610 .. 1610
C/T
rs148068634
-
3'UTR
1678 .. 1678
C/T
rs145545969
-
3'UTR
1703 .. 1703
G/C
rs9981359
-
3'UTR
1739 .. 1739
A/G
rs201712356
-
3'UTR
1898 .. 1898
C/T
rs146641835
-
3'UTR
1958 .. 1958
G/T
rs200004870
+
3'UTR
1972 ^ 1973
-/G
rs68171349
-
3'UTR
2004 .. 2004
T/C
rs111597637
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;