H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
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Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
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GO name*
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HGNC gene name*
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InterPro name*
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H-Invitational ID:
HIT000005739
Accession number:
AK022465
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Transmembrane protein 63A.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK022465.1
CAGE tag ID
NA
EST ID
NA
Clone Number
MAMMA1002820
Experimental resources
NBRC
;
HGPD
;
Antibody (TMEM63A)
;
Catalog (TMEM63A)
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
1854[bp] (No. of exon:1)[A:448 T:551 G:395 C:460]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Mammary gland
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
1414-1414[bp] Insertion(G);
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TCATGATTAGCTTTGCCAAACCATCTCCCTAGATTATTTTTCTTTTTAAA TTTCACTTTGCATTTGGTTAATCATTCCCTGGGAAAGCACACGGGGCAGG TGGGCCTCCTTGTCTTCACTTTGCCATTCCCTATCTGATGAATTCTGAAC CTCAGTTTTTCATCCAAGAACTGGAGTTAAAACACCTGCACTATTATACA GGGCGTGAGGCTGTTGTCATGATAATCAATGAGCTGATGTGTGGTTGAAG CTCTTATCTGACTCCATAGATAGTTTTAAACTACCTAAGTATAAATTCAG CAGCTTTGCTTAAGATTTAAAGCAGGTATTATAAATATGCATTCCTTTGC CGATCTTTTAATAGAAGGACAGGCCTATTCTTTTGAAGATGGATCTGCTG ATGAGAGCTCCCCTTTGTCTACTTTACATCAACCACACCCTTATTTCATT GTTTTGTGATTCCAGTGTTGGTTTCTTTAAAGTAAAGGAAGAATTTAGAT ATTTGCCGAGCCATTCTGAATATAGAAACTTCCTAGATCGCATATCCCTT GATCTTTTATCGTTAATTTACTCTCATCTAATTAACAGCGTTTTGTTTTT TTTTTTAGAAATTGACTTTTATTAAGTCTTTCCAAAGTAGCCAACTTAGT TTTCAAAGAAAATTTCTCTCTATTTTTATGTTCATCTAATCAGTGACAGT AATAAGTCAATCAGCTCATGTAATCCCAGTAACAAACAGCAGGATTGTGG ACACACACAGTGGAGCCCTGATATGCTGCAGCTGGACAGTGGGAGCTGAG CAGGCAGGGCACCCCCCCCCACCGCCGGCCAGGACTCCAGGCCTTCGGTG TTCAGTCTTGCCATGGCATCAGTCATTGGTTTTGTATAGGGAGCAGAGAA GGTTATTTAATCTGGTTAGTCAGATAAGTGGAGTTTACTCGTATGTGAAA TTGCTTTCTTTGCTGTGCTGTGAGGAGCTGTACAAATATAAGGTGCTGTT ACTGATTATTCAGCCAACATTTATGGACTACCAACTCTGTACCTGGCACA GTTTTGGTTCTGGGGTCAGAGATGACAAACTCCTACCCTGGGAGTCCACT GAGCGACCATACCAATAGGTCATGGCCTCAGAGCCGTGTGGCCCACGGCC CCTGTGACTCTCTCTGCTGTGGACCTTTCTCCTAGAACCCGATCATCAGC CAGTTCTTCCCCACCCTCCTGCTCTGGTCCTTCTCGGCCCTGCTCCCCTC CATTGTCTACTACTCTACACTGCTGGAGTCTCACTGGACCAAGTGAGTGC CCGGGAGCCCCGAGGCCCTGCCCCTAAGAAGGATATCTCTGACCGCTCCC TTGTCCACACCCTAACCCCCCAGCTGCTCAGGCAGTGGGCACATGGCAGG GGCCTCACTGGGGCACATAGAGCATTTGGGGGACTGCGAGTGCTCACCTT TGACTTCCTGCAGGTCGGGGGAAAACCAGATCATGATGACCAAAGTCTAC ATATTCTTGATCTTCATGGTGCTGATCCTGCCCTCCCTGGGTCTCACCAG GTATATGCCACCACCTTCTGCTCTAAATTCAGAATAAGAGTCACATCAGG AGAGCACTGTCCCCAGGAGAATGCAAACGGTTTGGCAGCAGAAGCAAACC TCTAACAATATCTAAGCCTGTCGCAACCACTCGGCGTGCAGTAGGGCTGG GTCATTGATTCTTCTGGCAATATGATTGATTGTTCTTCTTTAAAAAAGAA AAAAACACCATATTGGTCAGGCTGTTCTTGAGCTCCTGACCTCAGGTGAT CCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACTCTG TCTC
Gene structure information
H-Inv cluster ID
HIX0199783
Genomic location
Chromosome
1
Location
1q42.12
Position
226044049- 226045908
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
TMEM63A
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000041248
Predicted CDS
389..625; 78[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.633
MDLLMRAPLCLLYINHTLISLFCDSSVGFFKVKEEFRYLPSHSEYRNFLD RISLDLLSLIYSHLINSVLFFFLEIDFY*
Gene function information
H-Inv ID
HIT000005739
H-Inv cluster ID
HIX0199783
Accession number
AK022465.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Transmembrane protein 63A.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_055513
) [Identity/coverage = 96.552%/3.59%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
TMEM63A
HGNC aliases
"KIAA0792"
HGNC name
transmembrane protein 63A
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000041248
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
TMEM63A
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
215583_at;
HG-U133A
215583_at;
HG-U133A_2
215583_at;
HG-U133B
NA
HG-U133_Plus_2
215583_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2458537; 2458538; 2458539; 2458540; 2458541;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
104 .. 104
G/T
rs74150531
-
5'UTR
205 .. 205
G/A
rs145955553
-
5'UTR
412 .. 412
C/T
rs75421784
-
CDS
Synonymous[Pro8Pro]
524 .. 524
A/G
rs77715761
-
CDS
Nonsynonymous[Arg46Gly]
717 .. 717
C/T
rs142455033
-
3'UTR
749 .. 749
G/A
rs138985237
-
3'UTR
808 .. 808
G/A
rs11808321
-
3'UTR
818 .. 818
C/G
rs201102201
-
3'UTR
820 .. 820
C/T
rs199930629
-
3'UTR
824 .. 824
G/C
rs202112799
-
3'UTR
826 .. 826
C/A
rs80254295
-
3'UTR
832 .. 832
G/A
rs189451631
-
3'UTR
847 .. 847
G/A
rs12041277
-
3'UTR
894 .. 894
C/T
rs145102441
-
3'UTR
897 .. 897
A/T
rs58642590
-
3'UTR
905 .. 905
A/G
rs59320498
-
3'UTR
924 .. 924
A/G
rs61835165
-
3'UTR
941 .. 941
G/A
rs149226784
-
3'UTR
1049 .. 1049
C/G
rs79283347
-
3'UTR
1136 .. 1136
G/A
rs184619392
-
3'UTR
1137 .. 1137
T/C
rs9919303
-
3'UTR
1141 .. 1141
G/A
rs192380269
-
3'UTR
1147 .. 1147
G/A
rs41305138
-
3'UTR
1162 .. 1162
C/G
rs200457337
-
3'UTR
1203 ^ 1204
-/G
rs11416437
-
3'UTR
1229 .. 1229
C/A
rs139209425
-
3'UTR
1236 .. 1236
G/A
rs141161871
-
3'UTR
1249 .. 1249
T/C
rs186710219
-
3'UTR
1311 .. 1311
C/T
rs201302061
-
3'UTR
1312 .. 1312
G/A
rs2292560
-
3'UTR
1402 .. 1402
G/-
rs3215220
-
3'UTR
1404 .. 1404
C/T
rs201224406
-
3'UTR
1405 .. 1405
T/C
rs200083477
-
3'UTR
1406 .. 1406
C/A
rs201954878
-
3'UTR
1407 .. 1407
A/C
rs200647579
-
3'UTR
1408 .. 1408
C/T
rs199522596
-
3'UTR
1409 .. 1409
T/G
rs199916633
-
3'UTR
1412 ^ 1413
-/G
rs60955535
-
3'UTR
1469 .. 1469
G/A
rs202236133
-
3'UTR
1512 .. 1512
C/T
rs140423726
-
3'UTR
1584 .. 1584
A/G
rs202232990
-
3'UTR
1587 .. 1587
A/C
rs12070816
-
3'UTR
1645 .. 1645
C/G
rs184282363
-
3'UTR
1672 .. 1672
C/T
rs151274660
-
3'UTR
1683 .. 1683
G/A
rs76717460
-
3'UTR
1686 .. 1686
G/A
rs146650677
-
3'UTR
1732 .. 1732
G/C
rs192799362
-
3'UTR
1840 .. 1840
G/A
rs12084714
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIRc
144
255
+
Tigger13a
315
933
-
L2a
1006
1065
-
AluSx
1757
1845
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;