H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000005739 Accession number: AK022465 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Transmembrane protein 63A.
 
 

Transcript original information
Accession number AK022465.1
CAGE tag ID NA
EST ID NA
Clone Number MAMMA1002820
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TMEM63A) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TMEM63A);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 1854[bp] (No. of exon:1)[A:448 T:551 G:395 C:460]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Mammary gland
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift 1414-1414[bp] Insertion(G);
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0199783
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226044049- 226045908
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardTMEM63A*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000041248
Predicted CDS 389..625;  78[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.633

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000005739
H-Inv cluster ID Locus viewHIX0199783
Accession number AK022465.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Transmembrane protein 63A.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_055513)  [Identity/coverage = 96.552%/3.59%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TMEM63A
HGNC aliases "KIAA0792"
HGNC name transmembrane protein 63A
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000041248
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardTMEM63A*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P signal peptide
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 215583_at; 
HG-U133A 215583_at; 
HG-U133A_2 215583_at; 
HG-U133B NA
HG-U133_Plus_2 215583_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2458537;  2458538;  2458539;  2458540;  2458541; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
104 .. 104 G/T rs74150531 - 5'UTR
205 .. 205 G/A rs145955553 - 5'UTR
412 .. 412 C/T rs75421784 - CDS Synonymous[Pro8Pro]
524 .. 524 A/G rs77715761 - CDS Nonsynonymous[Arg46Gly]
717 .. 717 C/T rs142455033 - 3'UTR
749 .. 749 G/A rs138985237 - 3'UTR
808 .. 808 G/A rs11808321 - 3'UTR
818 .. 818 C/G rs201102201 - 3'UTR
820 .. 820 C/T rs199930629 - 3'UTR
824 .. 824 G/C rs202112799 - 3'UTR
826 .. 826 C/A rs80254295 - 3'UTR
832 .. 832 G/A rs189451631 - 3'UTR
847 .. 847 G/A rs12041277 - 3'UTR
894 .. 894 C/T rs145102441 - 3'UTR
897 .. 897 A/T rs58642590 - 3'UTR
905 .. 905 A/G rs59320498 - 3'UTR
924 .. 924 A/G rs61835165 - 3'UTR
941 .. 941 G/A rs149226784 - 3'UTR
1049 .. 1049 C/G rs79283347 - 3'UTR
1136 .. 1136 G/A rs184619392 - 3'UTR
1137 .. 1137 T/C rs9919303 - 3'UTR
1141 .. 1141 G/A rs192380269 - 3'UTR
1147 .. 1147 G/A rs41305138 - 3'UTR
1162 .. 1162 C/G rs200457337 - 3'UTR
1203 ^ 1204 -/G rs11416437 - 3'UTR
1229 .. 1229 C/A rs139209425 - 3'UTR
1236 .. 1236 G/A rs141161871 - 3'UTR
1249 .. 1249 T/C rs186710219 - 3'UTR
1311 .. 1311 C/T rs201302061 - 3'UTR
1312 .. 1312 G/A rs2292560 - 3'UTR
1402 .. 1402 G/- rs3215220 - 3'UTR
1404 .. 1404 C/T rs201224406 - 3'UTR
1405 .. 1405 T/C rs200083477 - 3'UTR
1406 .. 1406 C/A rs201954878 - 3'UTR
1407 .. 1407 A/C rs200647579 - 3'UTR
1408 .. 1408 C/T rs199522596 - 3'UTR
1409 .. 1409 T/G rs199916633 - 3'UTR
1412 ^ 1413 -/G rs60955535 - 3'UTR
1469 .. 1469 G/A rs202236133 - 3'UTR
1512 .. 1512 C/T rs140423726 - 3'UTR
1584 .. 1584 A/G rs202232990 - 3'UTR
1587 .. 1587 A/C rs12070816 - 3'UTR
1645 .. 1645 C/G rs184282363 - 3'UTR
1672 .. 1672 C/T rs151274660 - 3'UTR
1683 .. 1683 G/A rs76717460 - 3'UTR
1686 .. 1686 G/A rs146650677 - 3'UTR
1732 .. 1732 G/C rs192799362 - 3'UTR
1840 .. 1840 G/A rs12084714 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRc 144 255 +
Tigger13a 315 933 -
L2a 1006 1065 -
AluSx 1757 1845 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer