H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000007416 Accession number: AK024142 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK024142.1
CAGE tag ID NA
EST ID NA
Clone Number HEMBB1002152
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2102[bp] (No. of exon:2)[A:492 T:611 G:525 C:474]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type whole embryo, mainly body
Develpmental stage embryo, 10 weeks
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0020351
Genomic location  G-integra Help Chromosome 2
Location 2q31.1
Position 172629992- 172632354
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000438246
Predicted CDS 627..1232;  201[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.74

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000007416
H-Inv cluster ID Locus viewHIX0020351
Accession number AK024142.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000438246
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT mitochondria;  nuclear;  cytosol;  Other; 
Target P mitochondria
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 216108_at;  216110_x_at; 
HG-U133A 216108_at;  216110_x_at; 
HG-U133A_2 216108_at;  216110_x_at; 
HG-U133B NA
HG-U133_Plus_2 216108_at;  216110_x_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2515349;  2515350;  2707032;  3474682; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
341 .. 341 G/C rs147794871 - 5'UTR
438 .. 438 A/G rs200253351 - 5'UTR
462 .. 462 G/A rs140047203 - 5'UTR
623 .. 623 G/C rs184079111 - 5'UTR
650 .. 650 A/G rs202211385 - CDS Synonymous[Gln8Gln]
678 .. 678 C/T rs13416115 - CDS AA-STOP[Gln18*]
726 .. 726 A/C rs192191773 - CDS Nonsynonymous[Asn34His]
740 .. 740 A/C rs138198680 - CDS Synonymous[Leu38Leu]
748 .. 748 C/T rs186904295 - CDS Nonsynonymous[Pro41Leu]
882 .. 882 C/T rs181639127 - CDS Nonsynonymous[Arg86Trp]
911 .. 911 G/A rs190534713 - CDS Synonymous[Thr95Thr]
961 .. 961 A/G rs185726252 - CDS Nonsynonymous[Gln112Arg]
997 .. 997 C/T rs75847248 - CDS Nonsynonymous[Pro124Leu]
1140 .. 1140 C/T rs142898665 - CDS Nonsynonymous[Arg172Cys]
1204 .. 1204 T/G rs184467403 - CDS Nonsynonymous[Ile193Ser]
1260 .. 1260 T/C rs77902734 - 3'UTR
1362 .. 1362 C/T rs79795190 - 3'UTR
1381 .. 1381 T/C rs4510184 - 3'UTR
1442 .. 1442 C/T rs146286792 - 3'UTR
1502 .. 1502 G/A rs200082673 - 3'UTR
1509 .. 1509 G/A rs148118347 - 3'UTR
1659 .. 1659 A/C rs143635920 - 3'UTR
1672 .. 1672 A/G rs148929060 - 3'UTR
1695 .. 1695 A/G rs6727050 - 3'UTR
1713 .. 1713 C/T rs190573966 - 3'UTR
1779 ^ 1780 -/C rs34214513 - 3'UTR
1900 .. 1900 T/G rs147955337 - 3'UTR
1914 .. 1914 G/A rs118120566 - 3'UTR
1967 .. 1967 C/T rs184578513 - 3'UTR
2038 .. 2038 G/T rs76700450 - 3'UTR
2055 .. 2055 T/A rs192105995 - 3'UTR
2060 .. 2060 A/C rs75813885 - 3'UTR
2095 .. 2095 T/C rs187233072 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluJo 2 120 -
L1M5 224 289 -
SVA_C 308 1535 -
L1M5 1542 2098 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer