H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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H-Invitational ID:
HIT000007416
Accession number:
AK024142
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK024142.1
CAGE tag ID
NA
EST ID
NA
Clone Number
HEMBB1002152
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2102[bp] (No. of exon:2)[A:492 T:611 G:525 C:474]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
whole embryo, mainly body
Develpmental stage
embryo, 10 weeks
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGTAGAGATAGGATTTCCCTATGTTACCCAGGCTGGTTTCAAACTCCTGG GCTGAAGGAATCCTTCCATCTCAGCCTCTTAAAGTGTTGGGATTACAGGT GTGAGCCATTATGCCCAGCCCCTCATTATTATTATTTAAAGAAAGCTAGG ACATTTTCACTATTTTTTTAAGAACTCTTTTCTAATCATCATATGCTAGA AACTGAGAAGGAACTCTTCATTGATTATTATTTCTTCTTGGACTCATGAG TTATTTAGAAGAATGTTTCTTAATTTCAAAATTTGGGAAAATATATATTA GTTTTTTTTGTTTTTGTTTTTGTTTTTATTGATCATTCTTGGGTGTTTCT CCCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCA GCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCC TGCGGCCTTCCGCAGTGTTTGTGTCATTGGGTACTTGAGATTAGGGAGTG GTGATGACTCTTAACGAGTATGCTGCCTTCAAGCATCTGTTTAACAAAGC ACATCTTGCACCACCCTTAATCCATTTAACCGAGTGGACACAGCACATGT TTCAGAGAGCACCGGGTTGGGGGTAAGGTCACAGATCAACAGCATCCCAA GGCAGAAGAATTTTTCTTAGTACAGAACAAAATGGAGTCTCCTATGTCTA CTTCTTTCTACACAGACACAGCAACAATCTGATTTCTCTATCTTTTCCCC ACATTTCCCCCTTTTGTATTCGACAAAACTGCCATCGTCATCATGGCCCG TTCTCAATGAGCTGTTGGGTACACCTCCCAGACGGGGTGGCGGCTGGGCA GAGGGGCTCCTCACTTCCCAGAAAGGGCGGCCGGGCAGAGGCGCCCCCCA CCTCCCGGACGGGGCGGCGGCCGGGCAGAGGCTGGCCCCCACCTCCCTCC CGGACGGGGCAGCTGGCCGGGCGGGGGCTGCCCCCCACCTCCCTCCCGGA CGGGGCGGCTGCCGGGCGGAGGGGGTCCTCACTTCTCAGACGGGGCGGCT GCCGGGCAGAGGGGCTCCTCACTTCTCAGACGGGGCGGCTGGGCAGAGAC GCTCCTCACCTCCCAGATGGGGTCGCGGCCGGGCAGAGGCGCTCCTCACA TCCCAGACGGGGCGGTGGGGCAGAGGCGCTCCCCACATCTCAGACGATGG GCATCCGGGCAGAGACGCTCCTCACTTCCTAGACGGGATGGCGGCCGGGA AGAGGCGCTTCTCACTTCCCAGACTGGGCAGCTGGGCAGAGGGGCTTCTC ACATCCCAGATGATGGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGAC GGGGTGGCAGCCGGGCAGAGGCTGCAATCTTGGCACTTTGGGAGGCCAAG GCAGGCGGCTGGGAGGTGGAGGTTGTAGCTAGCCGAGATCACGTCATTGC AGTCCAGCTTCGGCTCGGCATCAGAGGGAGACCGTGGAAAGAGAGGGAGA GGGAGACCGTGGGGAGACGGAGAGGGAGAGGGAGATATTAGTTTTTATTA TTGATTCCTAACATAATTGCATTGTGGTCTAAGGACACACTATCTATGAT TACAATCCTTTTGAAATCCTCTTGGCTCCATAGATCGTCATTTTAAAATA AATATTGCATGAACACTTACAAGAATATGTATTCTGCTATTGATAGGTAC TCTGTGTGAGGGCATGTGTGTACTCACTACTTTCACACATGGCATTATTT GGTCAAGTACAGCAATTTATTTAAAATGTCTATATCCTACTTTTTGTTTG CTTGTTCTGTCAATTGGTAAAAAAACAAAAAGCATGTTAAACTTTCCTAT TATAATTTTGTATTTTCTATTTCTCCTTGTAGTTCTGTCAATGTTTGCTT TTTACATTTTAAGGTTATGTCATTAGGTACATCAAGACAAATTAAGAGCT TCCAGATGAATTGATTCTTTTGTCATTGTCTCTTTTTTTAATCTCTAGTA ATGCTTTTTGTCTGAAAATTTATTTTTTGATATTACTGTAACTATATTTT TCTTTTTTAATATTTACAAGGAAAATTTTCTCTGTCCTTTTATTTTCACA TT
Gene structure information
H-Inv cluster ID
HIX0020351
Genomic location
Chromosome
2
Location
2q31.1
Position
172629992- 172632354
Strand
-
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000438246
Predicted CDS
627..1232; 201[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.74
GHRSTASQGRRIFLSTEQNGVSYVYFFLHRHSNNLISLSFPHISPFCIRQ NCHRHHGPFSMSCWVHLPDGVAAGQRGSSLPRKGGRAEAPPTSRTGRRPG RGWPPPPSRTGQLAGRGLPPTSLPDGAAAGRRGSSLLRRGGCRAEGLLTS QTGRLGRDAPHLPDGVAAGQRRSSHPRRGGGAEALPTSQTMGIRAETLLT S*
Gene function information
H-Inv ID
HIT000007416
H-Inv cluster ID
HIX0020351
Accession number
AK024142.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000438246
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
mitochondria; nuclear; cytosol; Other;
Target P
mitochondria
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
216108_at; 216110_x_at;
HG-U133A
216108_at; 216110_x_at;
HG-U133A_2
216108_at; 216110_x_at;
HG-U133B
NA
HG-U133_Plus_2
216108_at; 216110_x_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2515349; 2515350; 2707032; 3474682;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
341 .. 341
G/C
rs147794871
-
5'UTR
438 .. 438
A/G
rs200253351
-
5'UTR
462 .. 462
G/A
rs140047203
-
5'UTR
623 .. 623
G/C
rs184079111
-
5'UTR
650 .. 650
A/G
rs202211385
-
CDS
Synonymous[Gln8Gln]
678 .. 678
C/T
rs13416115
-
CDS
AA-STOP[Gln18*]
726 .. 726
A/C
rs192191773
-
CDS
Nonsynonymous[Asn34His]
740 .. 740
A/C
rs138198680
-
CDS
Synonymous[Leu38Leu]
748 .. 748
C/T
rs186904295
-
CDS
Nonsynonymous[Pro41Leu]
882 .. 882
C/T
rs181639127
-
CDS
Nonsynonymous[Arg86Trp]
911 .. 911
G/A
rs190534713
-
CDS
Synonymous[Thr95Thr]
961 .. 961
A/G
rs185726252
-
CDS
Nonsynonymous[Gln112Arg]
997 .. 997
C/T
rs75847248
-
CDS
Nonsynonymous[Pro124Leu]
1140 .. 1140
C/T
rs142898665
-
CDS
Nonsynonymous[Arg172Cys]
1204 .. 1204
T/G
rs184467403
-
CDS
Nonsynonymous[Ile193Ser]
1260 .. 1260
T/C
rs77902734
-
3'UTR
1362 .. 1362
C/T
rs79795190
-
3'UTR
1381 .. 1381
T/C
rs4510184
-
3'UTR
1442 .. 1442
C/T
rs146286792
-
3'UTR
1502 .. 1502
G/A
rs200082673
-
3'UTR
1509 .. 1509
G/A
rs148118347
-
3'UTR
1659 .. 1659
A/C
rs143635920
-
3'UTR
1672 .. 1672
A/G
rs148929060
-
3'UTR
1695 .. 1695
A/G
rs6727050
-
3'UTR
1713 .. 1713
C/T
rs190573966
-
3'UTR
1779 ^ 1780
-/C
rs34214513
-
3'UTR
1900 .. 1900
T/G
rs147955337
-
3'UTR
1914 .. 1914
G/A
rs118120566
-
3'UTR
1967 .. 1967
C/T
rs184578513
-
3'UTR
2038 .. 2038
G/T
rs76700450
-
3'UTR
2055 .. 2055
T/A
rs192105995
-
3'UTR
2060 .. 2060
A/C
rs75813885
-
3'UTR
2095 .. 2095
T/C
rs187233072
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
AluJo
2
120
-
L1M5
224
289
-
SVA_C
308
1535
-
L1M5
1542
2098
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;