H-InvDB_9.0 released on May 27, 2015. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Invitational ID: HIT000009151 Accession number: AK025877 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Conserved hypothetical protein.

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Transcript original information Accession number AK025877.1 CAGE tag ID NA EST ID NA Clone Number HRC01703 Experimental resources   NBRC ; HGPD ; Antibody (ABL2) ; Catalog (ABL2); Sequence data provider Project:FLJ; Provider:FLJ/IMSUT;  Annotation project H-Invitational FLcDNA Length of cDNA 1839[bp] (No. of exon:1)[A:508 T:573 G:396 C:362] Devision HUM Molecular type mRNA Library origin Cell type primary human renal epithelial cells Tissue type NA Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 1817(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

ACGGTTAATTAGTGGCAGAGCCAAGGCTAGAATTCAAGTCTCTTGACTTT ATGGTTGTGGGGTCTTTCCACCATACCTGCTGCCATGTGAGACACTGCAA AAAAGTGGCTCAGACCGACAATCAGCCTGTGTGGTGCTGCACACTTTCTA AAGCACATGCTCCTGACACTTTGACCTTAAGGGGCTTGAATGTGGAGTAA TGGGAACACAAGCCAAGCAAGCACTCAGTAGAATTCAGTCATTTAAAAAA TTCAGTGGGGTCATTCTTTTGGACAGACCTCAGCAACACAGCAATGTGCA CTTTGTAGTAAAGAAATACCAACTTGAGTTTTTAAAAAACCTAGTTAGTC CTACATTCCCTTTTCTTTAAAAAAACTTTATTGTTCACATTATTTTAATG ACTATGAGATAATGTATATGACAGCACTTTGAGAAAATATCAACTGTAAT ATAACTATAAGGTTGTAGTATTGTCTGTTTAAAAGATAAGACAGTTGATT CAATGTGGATGGACCCTGTGGGGTACCTGAAAATGTAGATACGTAAGAAT CACCTCTGTCATTTATCACATTTAGAAATATGAAACTGCTTAACAGGTAT GAGCAGGTATAGCAAGTGTTTGCTAAAGTTGTAGTTCAGAGCTGAATTAC TTCAGGAAACTAGGGACCAACTTTTTGGTTTAATTCCGATCTTTAAAAAG TAAGAATGTGTACTCACTCCAGAACACAGAAGCTCTTCCAAGGACCTTGA CTCAAGAAGGATGAGGTCCTCTTACTCTTCTCCATTTATCCACTATATGC TTGGCCATTTATCCTAAATGTGGTGGGAACAGACTTGTTATCTGTTGATG TTGACAGTGTCTTTTTTAACCTATGTCCTGCATAGTTTTGTTAGGTTTAC AGGGGGAGGTGGATGGCCATAAAACCAGTGCACTTTGGGAATTACTTTTC TAGGATTTCCTACCAGTTATAAATGACATTGACATTTGTCATCTTTTTTT TCTTTTTCTAAAAAGAATAGCTGAATTTAATTCACCTATTATAAAATACT CAAAAGTAAATTGCATTGGTGGCCACTTCTGAATTATAGCTACATTTCAT TATGACCCCTTCTGCTCTCTTCCATTTTGCTACTGATGTCATTCTTGTTA TCAGGCTGTGCCCCTACCAGGAGTTCATATTGGGTTGACAGGGTTATCTA TATTTTTGTTCTTGATTTTTGAGTTTTATCATCTTGCATTAAATTGTTCC ACCTGGATTTGGGGTTCATCTCTGTGCCCTAAGGATCTGCTATGACCAAT CCTCTTTTTGTAGGTGGGTCTCTGGCTTAAGTATTGATAGGCTTCAGCGG TTTGTGTCTCTGTCTTAGCTTGTATCAAGCCAGTAGTAGCTCACTTCCTT TGTAAATTCCTGCTTCAGTCTGGGATCCGTAGGAGTATGTGAGAACTTCT GAAACGTCTCCAACTCTTAACAGTCAAGATATCTATATCATTTGGATAGA GTTCTGGTTTTCCAACTACTAGACTTAAAGAAATTCTGGCCGGGTGCGGT GGCTCACGCCTGTAATCCCAGCACTTTGGGGGGCTGAGGCGGGTGGATCA CGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCCACCT CTACTAAAAATACAAAAACTTAGCTGGGCGTGGTGGCGGGCGCCTGTAGT CCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGC GGAGCTTGCAGTGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGTGAC AGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0001374
Genomic location	Chromosome	1
	Location	1q25.2
	Position	179071166- 179072982
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:27;
	KEGG GENES	KEGG GENES(27);
	GeneCard	ABL2;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000061350 Predicted CDS 200..370;  56[aa];  Orientation:+2;  Codon Adaptation Index (CAI). 0.65

MGTQAKQALSRIQSFKKFSGVILLDRPQQHSNVHFVVKKYQLEFLKNLVS PTFPFL*

Gene function information

H-Inv ID		HIT000009151
H-Inv cluster ID		HIX0001374
Accession number		AK025877.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Conserved hypothetical protein.
Similarity category		Category: Conserved hypothetical protein(Category IV).
		Conserved hypothetical protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ABL2
	HGNC aliases	"v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)", "v-abl Abelson murine leukemia viral oncogene homolog 2", "c-abl oncogene 2, non-receptor tyrosine kinase"
	HGNC name	ABL proto-oncogene 2, non-receptor tyrosine kinase
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000061350
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:27;
	KEGG GENES	KEGG GENES(27);
	GeneCard	ABL2;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:27-May-2015

WoLF PSORT	mitochondria;  extracellular;  cytosol;  Other;
Target P	Not predicted
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			liver;
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	231907_at;
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	231907_at;
		HG-U133_Plus_2	231907_at;
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2446052;  2831983;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:27-May-2015

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:  164690;  Title: V-ABL ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2
Co-localized orphan diseases		NA
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(27)
	Disease	Entrez Gene ID:(27)
	Substance	Entrez Gene ID:(27)
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 17 .. 17 A/G rs4651013 - 5'UTR 68 .. 68 C/T rs181292776 - 5'UTR 108 .. 108 G/A rs189692933 - 5'UTR 255 .. 255 G/A rs3829794 - CDS Nonsynonymous[Ser19Asn] 359 .. 359 C/T rs75390485 - CDS Nonsynonymous[Pro54Ser] 502 .. 502 A/C rs141734152 - 3'UTR 503 .. 503 A/T rs184431230 - 3'UTR 664 .. 664 G/T rs181004855 - 3'UTR 688 .. 688 G/A rs78206228 - 3'UTR 710 .. 710 G/A rs188091596 - 3'UTR 725 .. 725 C/T rs144717721 - 3'UTR 769 .. 769 C/A rs116676084 - 3'UTR 862 .. 862 T/A rs148754852 - 3'UTR 871 .. 871 C/T rs144208966 - 3'UTR 909 .. 909 G/A rs184844560 - 3'UTR 1052 .. 1052 A/T rs192470920 - 3'UTR 1065 .. 1065 A/C rs1325194 + 3'UTR 1114 .. 1114 G/C rs187364738 - 3'UTR 1118 .. 1118 T/C rs4651012 - 3'UTR 1191 .. 1191 G/C rs115727481 - 3'UTR 1200 .. 1200 A/G rs149984339 - 3'UTR 1227 .. 1227 T/C rs1325195 + 3'UTR 1253 .. 1253 C/T rs184192725 - 3'UTR 1268 .. 1268 A/G rs192732952 - 3'UTR 1429 .. 1429 G/A rs139185338 - 3'UTR 1547 .. 1547 C/T rs150802921 - 3'UTR 1548 .. 1548 G/A rs141891067 - 3'UTR 1594 .. 1594 T/C rs188159185 - 3'UTR 1636 .. 1636 G/A rs138653896 - 3'UTR 1797 .. 1797 T/C rs199965966 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand MIRb 1 84 - MIRc 404 462 + AluY 1538 1839 + Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;