H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000012358_04 Accession number: AK055744 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AK055744.1
CAGE tag ID NA
EST ID NA
Clone Number KIDNE2000315
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3757[bp] (No. of exon:1)[A:874 T:894 G:1114 C:875]
Devision NA
Molecular type NA
Library origin Cell type NA
Tissue type kidney
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0008072
Genomic location  G-integra Help Chromosome 9
Location 9q13
Position 67047068- 67050815
Strand +
Possible duplicated location(s) HIX0034850; 
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:364
KEGG GENES KEGG GENES(364)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000438691
Predicted CDS 348..740;  130[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.763

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000012358_04
H-Inv cluster ID Locus viewHIX0008072
Accession number AK055744.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000438691
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:364
KEGG GENES KEGG GENES(364)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Pan sp. (Chimpanzee) ENSPTRT00000038586 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
58 .. 58 G/A rs201744786 + 5'UTR
84 .. 84 G/A rs201374630 + 5'UTR
94 .. 94 A/G rs78166810 - 5'UTR
116 .. 116 C/T rs202198104 + 5'UTR
116 .. 116 C/T rs77484997 + 5'UTR
163 .. 163 T/G rs78983783 - 5'UTR
1317 .. 1317 T/G rs192669186 + 3'UTR
2539 .. 2539 G/T rs79704438 + 3'UTR
2865 .. 2865 A/G rs75414544 - 3'UTR
2882 .. 2882 T/C rs77492011 + 3'UTR
2920 .. 2920 G/A rs75118810 + 3'UTR
2941 .. 2941 A/G rs200309079 + 3'UTR
2941 .. 2941 A/G rs78019089 + 3'UTR
3077 .. 3077 A/G rs200564484 + 3'UTR
3691 .. 3691 G/A rs201177080 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer