H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000014506 Accession number: AK057899 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK057899.1
CAGE tag ID NA
EST ID NA
Clone Number CBR08752
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/IMSUT
Annotation project H-Invitational FLcDNA
Length of cDNA 1139[bp] (No. of exon:2)[A:275 T:198 G:352 C:314]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Reverse orientation revised; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0211148
Genomic location  G-integra Help Chromosome 13
Location 13q34
Position 113746525- 113752862
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23263
KEGG GENES KEGG GENES(23263)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000336473
Predicted CDS 100..282;  60[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.699

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000014506
H-Inv cluster ID Locus viewHIX0211148
Accession number AK057899.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000336473
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23263
KEGG GENES KEGG GENES(23263)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212935_at;  35147_at; 
HG-U133A 212935_at;  35147_at; 
HG-U133A_2 212935_at;  35147_at; 
HG-U133B NA
HG-U133_Plus_2 212935_at;  35147_at; 
HG-U95 35147_at; 
HG-U95A 35147_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3502375;  3502391; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P88099; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P88099; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
32 .. 32 T/C rs10665 - 5'UTR
97 .. 97 T/G rs1046257 - 5'UTR
207 .. 207 C/T rs145427451 - CDS Synonymous[Arg36Arg]
290 .. 290 C/T rs73578937 - 3'UTR
393 .. 393 C/G rs111473756 - 3'UTR
406 .. 406 A/G rs61966411 - 3'UTR
490 .. 490 C/T rs193139960 - 3'UTR
498 .. 498 C/T rs114545264 - 3'UTR
529 .. 529 G/A rs505964 - 3'UTR
540 .. 540 C/T rs516497 + 3'UTR
556 .. 556 G/A rs187684645 - 3'UTR
570 .. 570 C/- rs112477508 - 3'UTR
594 .. 594 T/G rs79534398 - 3'UTR
688 .. 688 C/T rs144841209 - 3'UTR
870 .. 870 C/T rs111882200 - 3'UTR
874 .. 874 G/A rs112942081 - 3'UTR
883 .. 883 G/A rs113588827 - 3'UTR
916 .. 916 G/A rs137935831 - 3'UTR
921 .. 921 C/T rs111350560 - 3'UTR
934 .. 934 G/A rs112513701 - 3'UTR
944 .. 944 A/G rs150292783 - 3'UTR
954 .. 954 T/C rs502219 - 3'UTR
971 .. 971 T/C rs502172 - 3'UTR
1005 .. 1005 C/T rs140211546 - 3'UTR
1128 .. 1128 G/A rs114371548 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer