H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000017324 Accession number: AK092457 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK092457.1
CAGE tag ID NA
EST ID NA
Clone Number PLACE6009430
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2035[bp] (No. of exon:2)[A:495 T:555 G:466 C:519]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002153
Genomic location  G-integra Help Chromosome 2
Location 2p13.2
Position 71916293- 71918581
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000053482
Predicted CDS 1300..1524;  74[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.733

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000017324
H-Inv cluster ID Locus viewHIX0002153
Accession number AK092457.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000053482
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1566185_at;  1566186_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2488396;  2488397; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
13 .. 13 G/A rs183047525 + 5'UTR
45 .. 45 A/G rs144153155 + 5'UTR
71 .. 71 T/G rs112391454 + 5'UTR
93 .. 93 G/T rs187014186 + 5'UTR
113 .. 113 T/C rs151175168 + 5'UTR
154 .. 154 C/G rs140162669 + 5'UTR
260 ^ 261 -/T rs35528928 + 5'UTR
369 .. 369 T/C rs11126341 + 5'UTR
535 .. 535 G/A rs78766019 + 5'UTR
536 .. 536 G/T rs191833001 + 5'UTR
547 .. 547 C/T rs150320124 + 5'UTR
558 .. 558 G/C rs182698280 + 5'UTR
746 .. 746 G/A rs80277852 + 5'UTR
820 .. 820 C/G rs6724598 + 5'UTR
883 .. 883 G/A rs187533915 + 5'UTR
1309 .. 1309 A/G rs2162624 + CDS Nonsynonymous[Arg4Gly]
1325 .. 1325 C/T rs2162625 + CDS Nonsynonymous[Ala9Val]
1401 .. 1401 C/T rs145019417 + CDS Synonymous[Pro34Pro]
1493 .. 1493 C/A rs61510380 + CDS Nonsynonymous[Pro65His]
1506 .. 1506 A/G rs144891075 + CDS Synonymous[Pro69Pro]
1555 .. 1555 C/A rs192785662 + 3'UTR
1597 .. 1597 T/A rs76672220 + 3'UTR
1600 .. 1600 C/T rs138725801 + 3'UTR
1669 .. 1669 C/A rs10191606 + 3'UTR
1680 .. 1680 C/T rs10191687 + 3'UTR
1699 .. 1699 C/T rs10191693 + 3'UTR
1727 .. 1727 G/A rs185520324 + 3'UTR
1739 .. 1739 C/T rs189509032 + 3'UTR
1800 .. 1800 C/T rs143218914 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2b 154 363 -
MER20 430 513 +
MLT1L 553 878 +
MER91B 954 1040 +
MER91B 1046 1129 +
L2 1133 1731 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer