H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000017743 Accession number: AK092876 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to N-acetyl-D-glucosamine kinase.
 
 

Transcript original information
Accession number AK092876.1
CAGE tag ID NA
EST ID NA
Clone Number SPLEN2004880
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2483[bp] (No. of exon:3)[A:606 T:650 G:645 C:582]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type spleen
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002147
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71301750- 71305769
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000210167
Predicted CDS 2038..2352;  104[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.808

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000017743
H-Inv cluster ID Locus viewHIX0002147
Accession number AK092876.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to N-acetyl-D-glucosamine kinase.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_060037)  [Identity/coverage = 100.0%/31.28%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number EC 2.7.1.59N-acetylglucosamine kinase; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway 00251 :Glutamate metabolism;  00530 :Aminosugars metabolism; 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000210167
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria;  cytosol;  nuclear; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
2 104 2ch5A1 6e-31 100.0 100/100 c.55.1.5
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA231106; 
Affymetrix
GeneChip
HG-Focus 218231_at; 
HG-U133 218231_at; 
HG-U133A 218231_at; 
HG-U133A_2 218231_at; 
HG-U133B NA
HG-U133_Plus_2 218231_at; 
HG-U95 46246_at; 
HG-U95A NA
HG-U95B 46246_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2488063;  2488064;  2488065;  2488066;  2488067;  2488068;  2488069;  2488077; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
6 .. 6 A/G rs11126316 + 5'UTR
24 .. 24 G/A rs188529548 + 5'UTR
70 .. 70 C/T rs181347337 + 5'UTR
210 .. 210 T/C rs34550823 + 5'UTR
283 .. 283 C/T rs11890583 + 5'UTR
312 .. 312 A/T rs185127195 + 5'UTR
315 .. 315 A/T rs13426800 + 5'UTR
364 .. 364 A/G rs138717181 + 5'UTR
407 .. 407 T/C rs141733302 + 5'UTR
501 .. 501 A/G rs111854185 + 5'UTR
539 .. 539 A/T rs189204814 + 5'UTR
648 .. 648 A/T rs78301832 + 5'UTR
691 .. 691 T/C rs111798937 + 5'UTR
767 .. 767 C/T rs143619818 + 5'UTR
802 .. 802 C/A rs181051905 + 5'UTR
806 .. 806 G/C rs187175018 + 5'UTR
826 .. 826 A/T rs76365247 + 5'UTR
828 .. 828 T/A rs74779422 + 5'UTR
857 .. 857 T/C rs192420781 + 5'UTR
921 .. 921 C/T rs112586600 + 5'UTR
933 .. 933 C/T rs182834872 + 5'UTR
945 .. 945 C/T rs142624273 + 5'UTR
952 .. 952 G/C rs201078608 + 5'UTR
953 .. 953 G/T rs148350552 + 5'UTR
961 .. 961 C/T rs148054431 + 5'UTR
999 .. 999 G/C rs201526773 + 5'UTR
1010 .. 1010 G/A rs141425614 + 5'UTR
1011 .. 1011 A/T rs76423411 + 5'UTR
1213 .. 1213 A/G rs74846874 + 5'UTR
1243 .. 1243 T/A rs1861853 - 5'UTR
1301 .. 1301 G/A rs2241264 - 5'UTR
1525 .. 1525 C/T rs17501197 + 5'UTR
1571 .. 1571 G/A rs113616980 + 5'UTR
1612 .. 1612 C/A rs185931390 + 5'UTR
1707 .. 1707 C/T rs190007706 + 5'UTR
1723 .. 1723 G/A rs117610220 + 5'UTR
1778 .. 1778 G/A rs182547041 + 5'UTR
2012 .. 2012 G/A rs142872700 + 5'UTR
2098 .. 2098 A/G rs146053228 + CDS Nonsynonymous[Lys21Glu]
2130 .. 2130 T/C rs112506822 + CDS Synonymous[Ser31Ser]
2133 .. 2133 A/G rs1043701 + CDS Synonymous[Val32Val]
2170 .. 2170 T/C rs6713 - CDS Synonymous[Leu45Leu]
2174 .. 2174 C/T rs144807367 + CDS Nonsynonymous[Ala46Val]
2186 .. 2186 G/A rs188706050 + CDS Nonsynonymous[Gly50Asp]
2217 .. 2217 C/T rs112235207 + CDS Synonymous[Ser60Ser]
2269 .. 2269 C/G rs200730544 + CDS Nonsynonymous[Leu78Val]
2276 .. 2276 C/T rs139536732 + CDS Nonsynonymous[Ala80Val]
2278 .. 2278 A/G rs145168741 + CDS Nonsynonymous[Arg81Gly]
2313 .. 2313 C/T rs142009799 + CDS Synonymous[Ser92Ser]
2352 .. 2352 G/- rs34337134 + CDS
2374 .. 2374 C/T rs145881172 + 3'UTR
2375 .. 2375 C/G rs112773895 + 3'UTR
2439 .. 2439 C/A/G rs112601471 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluSx1 14 313 +
MER103C 394 546 +
7SLRNA 561 605 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer