H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000020366 Accession number: AK095511 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK095511.1
CAGE tag ID NA
EST ID NA
Clone Number FCBBF1000270
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3584[bp] (No. of exon:1)[A:1361 T:985 G:586 C:652]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage fetal
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002543
Genomic location  G-integra Help Chromosome 2
Location 2q24.2
Position 162290385- 162293969
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100130761
KEGG GENES KEGG GENES(100130761)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000439635
Predicted CDS 1664..2056;  130[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.719

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000020366
H-Inv cluster ID Locus viewHIX0002543
Accession number AK095511.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000439635
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100130761
KEGG GENES KEGG GENES(100130761)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  plasma membrane;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2512779; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
31 .. 31 G/A rs7349346 - 5'UTR
51 .. 51 G/A rs7349345 - 5'UTR
66 .. 66 G/A rs114203252 - 5'UTR
69 .. 69 T/C rs180727366 - 5'UTR
96 .. 96 G/A rs7349344 - 5'UTR
97 ^ 98 -/G rs35915299 - 5'UTR
191 .. 191 A/C rs28637735 - 5'UTR
197 .. 197 A/T rs192079127 - 5'UTR
228 .. 228 A/C rs114397185 - 5'UTR
248 .. 248 A/G rs187289521 - 5'UTR
256 .. 256 T/C rs115287381 - 5'UTR
452 .. 452 A/G rs140196298 - 5'UTR
567 .. 567 T/C rs10930018 - 5'UTR
665 .. 665 G/A rs181914517 - 5'UTR
701 .. 701 A/G rs77899260 - 5'UTR
865 .. 865 A/T rs77363740 - 5'UTR
926 .. 926 T/C rs79626413 - 5'UTR
966 .. 966 T/C rs114296915 - 5'UTR
1027 .. 1027 T/G rs73971192 - 5'UTR
1209 .. 1209 G/A rs7581103 - 5'UTR
1242 .. 1242 A/G rs190264512 - 5'UTR
1392 .. 1392 T/C rs184348992 - 5'UTR
1539 .. 1539 C/T rs71597824 - 5'UTR
1566 .. 1566 A/G rs77739172 - 5'UTR
1571 .. 1571 G/A rs77547753 - 5'UTR
1577 .. 1577 C/T rs75264325 + 5'UTR
1586 .. 1586 C/G rs62376429 - 5'UTR
1607 .. 1607 C/T rs144813480 - 5'UTR
1655 .. 1655 C/T rs78218415 - 5'UTR
1667 .. 1667 G/A rs79207282 - CDS Nonsynonymous[Ala2Thr]
1681 .. 1681 G/A rs78390487 - CDS Synonymous[Gln6Gln]
1723 .. 1723 C/T rs112339375 - CDS Synonymous[Ile20Ile]
1757 .. 1757 C/T rs112817306 - CDS Nonsynonymous[Pro32Ser]
1785 .. 1785 A/T rs112085071 - CDS Nonsynonymous[Asn41Ile]
1786 .. 1786 C/T rs140968848 - CDS Synonymous[Asn41Asn]
1790 .. 1790 G/A rs111532359 - CDS Nonsynonymous[Gly43Arg]
1817 .. 1817 G/C rs144275753 - CDS Nonsynonymous[Gly52Arg]
1863 .. 1863 C/A rs9683968 - CDS Nonsynonymous[Pro67Gln]
1910 .. 1910 G/A rs9684646 - CDS Nonsynonymous[Ala83Thr]
2231 .. 2231 A/T rs112521486 - 3'UTR
2355 .. 2355 C/T rs74370145 + 3'UTR
2358 .. 2358 G/A rs181341107 - 3'UTR
2579 .. 2579 G/A rs116766036 - 3'UTR
2586 .. 2586 G/A rs71423098 - 3'UTR
2601 .. 2601 A/C rs74724497 - 3'UTR
2620 .. 2620 A/G rs188535508 - 3'UTR
2623 .. 2623 A/C rs114680284 - 3'UTR
2709 .. 2709 C/G rs183915747 - 3'UTR
2791 .. 2791 A/C rs72877969 - 3'UTR
2839 .. 2839 A/C rs115360997 - 3'UTR
2941 .. 2941 A/G rs150830316 - 3'UTR
3026 .. 3026 C/T rs192642377 - 3'UTR
3202 ^ 3203 -/GT rs3038155 - 3'UTR
3212 ^ 3213 -/GT/TG rs10678987 - 3'UTR
3221 ^ 3222 -/GT rs34218219 - 3'UTR
3223 ^ 3224 -/TG rs149413117 - 3'UTR
3224 .. 3224 C/T rs199858669 - 3'UTR
3251 .. 3251 A/G rs190570926 - 3'UTR
3276 .. 3276 G/A rs185648983 - 3'UTR
3367 .. 3367 C/A rs55861556 - 3'UTR
3370 .. 3370 A/T rs193020850 - 3'UTR
3465 .. 3465 G/A rs4988784 - 3'UTR
3525 .. 3525 T/C rs142617221 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
Location Variation Strand
3203..3222 (gt)10 +
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L1PA15 1324 2772 +
MER5B 2875 3029 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer