H-InvDB x AHG DB
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H-Invitational ID: HIT000027749 Accession number: AL832837 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to N-acetyl-D-glucosamine kinase.
 
 

Transcript original information
Accession number AL832837.1
CAGE tag ID NA
EST ID NA
Clone Number DKFZp667A0125
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:DKFZ/MIPS
Annotation project H-Invitational FLcDNA
Length of cDNA 4420[bp] (No. of exon:6)[A:1024 T:1152 G:1153 C:1091]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type lymph node
Develpmental stage adult
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 4410(+) Signal: 4388-4392(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002147
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71296108- 71305766
Strand +
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000213201
Predicted CDS 3808..4281;  157[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.813

Motif information
ORF

length(157),orf(3808:4281)
MFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAESAQQGDPLSRYIFRK
AGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLAL
TQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIA
FYSYTFS*
a.a.
length
InterPro Name
length(74), motif(18:91) 74 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000027749
H-Inv cluster ID Locus viewHIX0002147
Accession number AL832837.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to N-acetyl-D-glucosamine kinase.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_060037)  [Identity/coverage = 98.947%/48.72%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number EC 2.7.1.59N-acetylglucosamine kinase; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway 00251 :Glutamate metabolism;  00530 :Aminosugars metabolism; 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000213201
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  cytoskeleton; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
1 157 2ch5A1 1e-48 98.7 154/224 c.55.1.5
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA231106; 
Affymetrix
GeneChip
HG-Focus 218231_at; 
HG-U133 218231_at; 
HG-U133A 218231_at; 
HG-U133A_2 218231_at; 
HG-U133B NA
HG-U133_Plus_2 218231_at; 
HG-U95 46246_at; 
HG-U95A NA
HG-U95B 46246_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2488050;  2488051;  2488052;  2488053;  2488054;  2488055;  2488056;  2488057;  2488059;  2488060;  2488061;  2488063;  2488064;  2488066;  2488067;  2488068;  2488069;  2488077; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
169 .. 169 T/G rs2009953 + 5'UTR
234 .. 234 A/G rs62145136 + 5'UTR
290 .. 290 T/A rs140568635 + 5'UTR
636 .. 636 A/T rs185683363 + 5'UTR
778 .. 778 T/C rs190348494 + 5'UTR
943 .. 943 C/T rs145530214 + 5'UTR
971 .. 971 T/C rs888352 - 5'UTR
985 .. 985 A/G rs147750938 + 5'UTR
1147 .. 1147 C/G rs180796534 + 5'UTR
1294 .. 1294 C/T rs142602615 + 5'UTR
1311 .. 1311 G/A rs10496181 + 5'UTR
1343 ^ 1344 -/C rs35785094 + 5'UTR
1376 .. 1376 G/A rs145777845 + 5'UTR
1442 .. 1442 C/T rs999240 - 5'UTR
1512 .. 1512 C/T rs41285971 + 5'UTR
1532 .. 1532 C/G rs138356329 + 5'UTR
1588 .. 1588 G/A rs77352101 + 5'UTR
1609 .. 1609 T/C rs2287328 - 5'UTR
1628 .. 1628 T/A rs17856147 + 5'UTR
1631 .. 1631 G/C rs111712781 + 5'UTR
1633 .. 1633 A/G/T rs111607540 + 5'UTR
1664 .. 1664 G/C rs75589581 + 5'UTR
1730 .. 1730 G/T rs148823405 + 5'UTR
1775 .. 1775 T/C rs185363544 + 5'UTR
1836 .. 1836 G/A rs192172897 + 5'UTR
1842 .. 1842 C/T rs143520899 + 5'UTR
1849 .. 1849 C/T rs17849984 + 5'UTR
1858 .. 1858 A/T rs150821125 + 5'UTR
1862 .. 1862 T/A rs2418893 + 5'UTR
1865 .. 1865 G/A rs2418894 + 5'UTR
1880 .. 1880 C/T rs3211088 + 5'UTR
1896 .. 1896 C/T rs2287327 - 5'UTR
2012 .. 2012 G/A rs148003976 + 5'UTR
2141 .. 2141 G/A rs141750673 + 5'UTR
2151 .. 2151 G/A rs116908418 + 5'UTR
2169 .. 2169 C/G rs145991956 + 5'UTR
2183 .. 2183 T/C rs1861854 - 5'UTR
2231 .. 2231 G/T rs77575917 + 5'UTR
2252 .. 2252 C/T rs12996507 + 5'UTR
2315 .. 2315 T/G rs115772674 + 5'UTR
2400 .. 2400 T/C rs13023145 + 5'UTR
2451 .. 2451 C/T rs74890112 + 5'UTR
2608 .. 2608 G/A rs183889158 + 5'UTR
2661 .. 2661 G/A rs201143239 + 5'UTR
2689 .. 2689 G/A rs112024192 + 5'UTR
2695 .. 2695 G/A rs75976980 + 5'UTR
2707 .. 2707 C/T rs141798565 + 5'UTR
2719 .. 2719 G/T rs146271156 + 5'UTR
2744 .. 2744 C/T rs143484080 + 5'UTR
2745 .. 2745 G/A rs144077605 + 5'UTR
2754 .. 2754 C/A rs149052839 + 5'UTR
2763 .. 2763 G/C rs200297031 + 5'UTR
2789 .. 2789 G/C rs17849402 + 5'UTR
2840 .. 2840 C/A/T rs11539622 + 5'UTR
2844 .. 2844 G/A rs146931704 + 5'UTR
2932 .. 2932 C/G rs201875949 + 5'UTR
2933 .. 2933 C/A rs150661812 + 5'UTR
2942 .. 2942 C/G rs1043685 + 5'UTR
2943 .. 2943 T/A rs1043686 + 5'UTR
2945 .. 2945 C/T rs149375267 + 5'UTR
2949 .. 2949 G/A rs144758868 + 5'UTR
2983 .. 2983 G/C rs112552513 + 5'UTR
3097 .. 3097 C/G rs77907098 + 5'UTR
3213 .. 3213 C/A rs115328847 + 5'UTR
3311 .. 3311 T/C rs75562744 + 5'UTR
3312 .. 3312 G/A rs191826175 + 5'UTR
3396 .. 3396 C/T rs145571696 + 5'UTR
3416 .. 3416 G/A rs147709165 + 5'UTR
3617 .. 3617 T/C rs17616553 + 5'UTR
3637 .. 3637 G/C rs77337878 + 5'UTR
3724 .. 3724 G/A rs183509027 + 5'UTR
3753 .. 3753 C/T rs144182116 + 5'UTR
3774 .. 3774 G/A rs144974375 + 5'UTR
3793 .. 3793 T/C rs139590364 + 5'UTR
3795 .. 3795 C/T rs145487795 + 5'UTR
3822 .. 3822 C/G rs141245714 + CDS Nonsynonymous[Phe5Leu]
3835 .. 3835 C/T rs142624273 + CDS Nonsynonymous[Arg10Trp]
3842 .. 3842 G/C rs201078608 + CDS Nonsynonymous[Gly12Ala]
3843 .. 3843 G/T rs148350552 + CDS Synonymous[Gly12Gly]
3851 .. 3851 C/T rs148054431 + CDS Nonsynonymous[Thr15Ile]
3889 .. 3889 G/C rs201526773 + CDS Nonsynonymous[Gly28Arg]
3900 .. 3900 G/A rs141425614 + CDS Synonymous[Arg31Arg]
3901 .. 3901 A/T rs76423411 + CDS AA-STOP[Lys32*]
3941 .. 3941 G/A rs142872700 + CDS Nonsynonymous[Arg45His]
4027 .. 4027 A/G rs146053228 + CDS Nonsynonymous[Lys74Glu]
4059 .. 4059 T/C rs112506822 + CDS Synonymous[Ser84Ser]
4062 .. 4062 G/A rs1043701 + CDS Synonymous[Val85Val]
4099 .. 4099 T/C rs6713 - CDS Synonymous[Leu98Leu]
4103 .. 4103 C/T rs144807367 + CDS Nonsynonymous[Ala99Val]
4115 .. 4115 G/A rs188706050 + CDS Nonsynonymous[Gly103Asp]
4146 .. 4146 C/T rs112235207 + CDS Synonymous[Ser113Ser]
4198 .. 4198 C/G rs200730544 + CDS Nonsynonymous[Leu131Val]
4205 .. 4205 C/T rs139536732 + CDS Nonsynonymous[Ala133Val]
4207 .. 4207 A/G rs145168741 + CDS Nonsynonymous[Arg134Gly]
4242 .. 4242 C/T rs142009799 + CDS Synonymous[Ser145Ser]
4281 .. 4281 G/- rs34337134 + CDS
4303 .. 4303 C/T rs145881172 + 3'UTR
4304 .. 4304 C/G rs112773895 + 3'UTR
4368 .. 4368 C/A/G rs112601471 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIR3 314 454 +
L3 502 1014 -
L2c 1067 1412 -
L2 2016 2058 +
MIRb 2067 2308 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer