H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000029708 Accession number: BC000526 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Transmembrane protein 98.
 
 

Transcript original information
Accession number BC000526.2
CAGE tag ID NA
EST ID NA
Clone Number MGC:8605 IMAGE:2961267
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TMEM98) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TMEM98);
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 1501[bp] (No. of exon:7)[A:337 T:407 G:386 C:371]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Muscle, rhabdomyosarcoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1482(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0013710
Genomic location  G-integra Help Chromosome 17
Location 17q11.2
Position 31258343- 31268662
Strand +
Possible duplicated location(s) NA
Gene structure 7 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:26022
KEGG GENES KEGG GENES(26022)
GeneCard GeneCardTMEM98*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000051435
Predicted CDS 150..830;  226[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.781
Database links RefSeq NP_001028676NP_056359
UniProt Q9Y2Y6
CCDS CCDS11274

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000029708
H-Inv cluster ID Locus viewHIX0013710
Accession number BC000526.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Transmembrane protein 98.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_056359)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TMEM98
HGNC aliases NA
HGNC name transmembrane protein 98
DDBJ TMEM98
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000051435
No. of interaction 4
Interaction partner(s) HIP000063130HIP000063130HIP000104226HIP000104226
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:26022
KEGG GENES KEGG GENES(26022)
GeneCard GeneCardTMEM98*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  endoplasmic; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA150111;  AGhsC220907; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 223170_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 223170_at; 
HG-U133_Plus_2 223170_at; 
HG-U95 45501_s_at;  65860_at; 
HG-U95A NA
HG-U95B 45501_s_at; 
HG-U95C 65860_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2959493;  3538156;  3566766;  3566768;  3566769;  3566771;  3717876;  3717878;  3717879;  3717880;  3717881;  3717882;  3717883;  3717884;  3717886;  3717887;  3717888;  3752882; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P27035; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P27035;  A_23_P27040; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
25 .. 25 C/G rs192571372 + 5'UTR
27 .. 27 G/A rs9911256 + 5'UTR
42 .. 42 C/T rs114277652 + 5'UTR
105 .. 105 A/G rs201647960 + 5'UTR
123 .. 123 G/A rs11558976 + 5'UTR
174 .. 174 A/G rs142287076 + CDS Nonsynonymous[Ile9Val]
192 .. 192 A/G rs11558978 - CDS Nonsynonymous[Ile15Val]
206 .. 206 G/T rs59203084 + CDS Synonymous[Ser19Ser]
209 .. 209 T/G rs150823123 + CDS Nonsynonymous[Phe20Leu]
224 .. 224 G/A rs139991977 + CDS Synonymous[Leu25Leu]
260 .. 260 G/A rs148593533 + CDS Synonymous[Leu37Leu]
271 .. 271 A/G rs201623318 + CDS Nonsynonymous[Tyr41Cys]
326 .. 326 C/T rs146742706 + CDS Synonymous[Pro59Pro]
344 .. 344 C/T rs29019 - CDS Synonymous[Asp65Asp]
351 .. 351 G/A rs200601196 + CDS Nonsynonymous[Val68Ile]
375 .. 375 G/C rs144080462 + CDS Nonsynonymous[Ala76Pro]
383 .. 383 G/T rs3025292 - CDS Synonymous[Leu78Leu]
389 .. 389 T/C rs199679288 + CDS Synonymous[Asn80Asn]
396 .. 396 T/C rs35124349 - CDS Nonsynonymous[Trp83Arg]
401 .. 401 C/G rs149053784 + CDS Nonsynonymous[Ile84Met]
402 .. 402 G/A rs143051940 + CDS Nonsynonymous[Glu85Lys]
419 .. 419 C/T rs151140793 + CDS Synonymous[Leu90Leu]
429 .. 429 T/C rs201470479 + CDS Nonsynonymous[Cys94Arg]
456 .. 456 A/G rs141073994 + CDS Nonsynonymous[Thr103Ala]
527 .. 527 C/T rs201959602 + CDS Synonymous[Ser126Ser]
550 .. 550 G/A rs147119833 + CDS Nonsynonymous[Arg134Gln]
581 .. 581 G/T rs138518763 + CDS Nonsynonymous[Lys144Asn]
596 .. 596 G/A rs200836615 + CDS Synonymous[Pro149Pro]
609 .. 609 C/T rs144028922 + CDS Nonsynonymous[Leu154Phe]
617 .. 617 C/T rs150239100 + CDS Synonymous[Asp156Asp]
621 .. 621 C/T rs138851339 + CDS Nonsynonymous[Arg158Trp]
626 .. 626 G/A rs150723262 + CDS Synonymous[Thr159Thr]
638 .. 638 C/T rs149373911 + CDS Synonymous[Leu163Leu]
653 .. 653 C/T rs75786524 + CDS Synonymous[His168His]
688 .. 688 C/T rs139523036 + CDS Nonsynonymous[Thr180Met]
692 .. 692 A/G rs1042910 + CDS Synonymous[Gly181Gly]
759 .. 759 G/A rs142738715 + CDS Nonsynonymous[Ala204Thr]
834 .. 834 C/T rs28259 - 3'UTR
838 .. 838 A/C rs201452683 + 3'UTR
843 .. 843 A/T rs28258 - 3'UTR
868 .. 868 C/T rs3025288 - 3'UTR
914 .. 914 A/G rs11871410 + 3'UTR
930 .. 930 C/T rs28919 + 3'UTR
1057 .. 1057 C/G rs149484872 + 3'UTR
1154 .. 1154 A/C rs11080195 - 3'UTR
1197 .. 1197 C/T rs9772 - 3'UTR
1248 .. 1248 A/G rs11851 - 3'UTR
1302 .. 1302 G/T rs143921650 + 3'UTR
1374 .. 1374 G/C rs112306721 + 3'UTR
1449 .. 1449 C/T rs11558977 - 3'UTR
1473 ^ 1474 -/A rs141948577 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MER102a 1098 1353 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer