H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000029708
Accession number:
BC000526
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Transmembrane protein 98.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC000526.2
CAGE tag ID
NA
EST ID
NA
Clone Number
MGC:8605 IMAGE:2961267
Experimental resources
NBRC
;
HGPD
;
Antibody (TMEM98)
;
Catalog (TMEM98)
;
Sequence data provider
Provider:
MGC/NCI
;
Annotation project
H-Invitational FLcDNA
Length of cDNA
1501[bp] (No. of exon:7)[A:337 T:407 G:386 C:371]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Muscle, rhabdomyosarcoma
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 1482(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CCGGGAGCCACAGCCTGAGGCCCTCAGGTCTCTGCAGGTGTCGTGGAGGA ACCTAGCACCTGCCATCCTCTTCCCCAATTTGCCACTTCCAGCAGCTTTA GCCCATGAGGAGGATGTGACCGGGACTGAGTCAGGAGCCCTCTGGAAGCA TGGAGACTGTGGTGATTGTTGCCATAGGTGTGCTGGCCACCATCTTTCTG GCTTCGTTTGCAGCCTTGGTGCTGGTTTGCAGGCAGCGCTACTGCCGGCC GCGAGACCTGCTGCAGCGCTATGATTCTAAGCCCATTGTGGACCTCATTG GTGCCATGGAGACCCAGTCTGAGCCCTCTGAGTTAGAACTGGACGATGTC GTTATCACCAACCCCCACATTGAGGCCATTCTGGAGAATGAAGACTGGAT CGAAGATGCCTCGGGTCTCATGTCCCACTGCATTGCCATCTTGAAGATTT GTCACACTCTGACAGAGAAGCTTGTTGCCATGACAATGGGCTCTGGGGCC AAGATGAAGACTTCAGCCAGTGTCAGCGACATCATTGTGGTGGCCAAGCG GATCAGCCCCAGGGTGGATGATGTTGTGAAGTCGATGTACCCTCCGTTGG ACCCCAAACTCCTGGACGCACGGACGACTGCCCTGCTCCTGTCTGTCAGT CACCTGGTGCTGGTGACAAGGAATGCCTGCCATCTGACGGGAGGCCTGGA CTGGATTGACCAGTCTCTGTCGGCTGCTGAGGAGCATTTGGAAGTCCTTC GAGAAGCAGCCCTAGCTTCTGAGCCAGATAAAGGCCTCCCAGGCCCTGAA GGCTTCCTGCAGGAGCAGTCTGCAATTTAGTGCCTACAGGCCAGCAGCTA GCCATGAAGGCCCCTGCCGCCATCCCTGGATGGCTCAGCTTAGCCTTCTA CTTTTTCCTATAGAGTTAGTTGTTCTCCACGGCTGGAGAGTTCAGCTGTG TGTGCATAGTAAAGCAGGAGATCCCCGTCAGTTTATGCCTCTTTTGCAGT TGCAAACTGTGGCTGGTGAGTGGCAGTCTAATACTACAGTTAGGGGAGAT GCCATTCACTCTCTGCAAGAGGAGTATTGAAAACTGGTGGACTGTCAGCT TTATTTAGCTCACCTAGTGTTTTCAAGAAAATTGAGCCACCGTCTAAGAA ATCAAGAGGTTTCACATTAAAATTAGAATTTCTGGCCTCTCTCGATCGGT CAGAATGTGTGGCAATTCTGATCTGCATTTTCAGAAGAGGACAATCAATT GAAACTAAGTAGGGGTTTCTTCTTTTGGCAAGACTTGTACTCTCTCACCT GGCCTGTTTCATTTATTTGTATTATCTGCCTGGTCCCTGAGGCGTCTGGG TCTCTCCTCTCCCTTGCAGGTTTGGGTTTGAAGCTGAGGAACTACAAAGT TGATGATTTCTTTTTTATCTTTATGCCTGCAATTTTACCTAGCTACCACT AGGTGGATAGTAAATTTATACTTATGTTTCCAAAAAAAAAAAAAAAAAAA A
Gene structure information
H-Inv cluster ID
HIX0013710
Genomic location
Chromosome
17
Location
17q11.2
Position
31258343- 31268662
Strand
+
Possible duplicated location(s)
NA
Gene structure
7 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:26022
;
KEGG GENES
KEGG GENES(26022)
;
GeneCard
TMEM98
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000051435
Predicted CDS
150..830; 226[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.781
Database links
RefSeq
NP_001028676
;
NP_056359
;
UniProt
Q9Y2Y6
;
CCDS
CCDS11274
;
METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRDLLQRYDSKPIVDLI GAMETQSEPSELELDDVVITNPHIEAILENEDWIEDASGLMSHCIAILKI CHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYPPL DPKLLDARTTALLLSVSHLVLVTRNACHLTGGLDWIDQSLSAAEEHLEVL REAALASEPDKGLPGPEGFLQEQSAI*
Gene function information
H-Inv ID
HIT000029708
H-Inv cluster ID
HIX0013710
Accession number
BC000526.2
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Transmembrane protein 98.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_056359
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
TMEM98
HGNC aliases
NA
HGNC name
transmembrane protein 98
DDBJ
TMEM98
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000051435
No. of interaction
4
Interaction partner(s)
HIP000063130
;
HIP000063130
;
HIP000104226
;
HIP000104226
;
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:26022
;
KEGG GENES
KEGG GENES(26022)
;
GeneCard
TMEM98
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; endoplasmic;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Twilight zone
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA150111; AGhsC220907;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
223170_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
223170_at;
HG-U133_Plus_2
223170_at;
HG-U95
45501_s_at; 65860_at;
HG-U95A
NA
HG-U95B
45501_s_at;
HG-U95C
65860_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2959493; 3538156; 3566766; 3566768; 3566769; 3566771; 3717876; 3717878; 3717879; 3717880; 3717881; 3717882; 3717883; 3717884; 3717886; 3717887; 3717888; 3752882;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P27035;
Whole Human Genome Oligo Microarray:PGID247
A_23_P27035; A_23_P27040;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
25 .. 25
C/G
rs192571372
+
5'UTR
27 .. 27
G/A
rs9911256
+
5'UTR
42 .. 42
C/T
rs114277652
+
5'UTR
105 .. 105
A/G
rs201647960
+
5'UTR
123 .. 123
G/A
rs11558976
+
5'UTR
174 .. 174
A/G
rs142287076
+
CDS
Nonsynonymous[Ile9Val]
192 .. 192
A/G
rs11558978
-
CDS
Nonsynonymous[Ile15Val]
206 .. 206
G/T
rs59203084
+
CDS
Synonymous[Ser19Ser]
209 .. 209
T/G
rs150823123
+
CDS
Nonsynonymous[Phe20Leu]
224 .. 224
G/A
rs139991977
+
CDS
Synonymous[Leu25Leu]
260 .. 260
G/A
rs148593533
+
CDS
Synonymous[Leu37Leu]
271 .. 271
A/G
rs201623318
+
CDS
Nonsynonymous[Tyr41Cys]
326 .. 326
C/T
rs146742706
+
CDS
Synonymous[Pro59Pro]
344 .. 344
C/T
rs29019
-
CDS
Synonymous[Asp65Asp]
351 .. 351
G/A
rs200601196
+
CDS
Nonsynonymous[Val68Ile]
375 .. 375
G/C
rs144080462
+
CDS
Nonsynonymous[Ala76Pro]
383 .. 383
G/T
rs3025292
-
CDS
Synonymous[Leu78Leu]
389 .. 389
T/C
rs199679288
+
CDS
Synonymous[Asn80Asn]
396 .. 396
T/C
rs35124349
-
CDS
Nonsynonymous[Trp83Arg]
401 .. 401
C/G
rs149053784
+
CDS
Nonsynonymous[Ile84Met]
402 .. 402
G/A
rs143051940
+
CDS
Nonsynonymous[Glu85Lys]
419 .. 419
C/T
rs151140793
+
CDS
Synonymous[Leu90Leu]
429 .. 429
T/C
rs201470479
+
CDS
Nonsynonymous[Cys94Arg]
456 .. 456
A/G
rs141073994
+
CDS
Nonsynonymous[Thr103Ala]
527 .. 527
C/T
rs201959602
+
CDS
Synonymous[Ser126Ser]
550 .. 550
G/A
rs147119833
+
CDS
Nonsynonymous[Arg134Gln]
581 .. 581
G/T
rs138518763
+
CDS
Nonsynonymous[Lys144Asn]
596 .. 596
G/A
rs200836615
+
CDS
Synonymous[Pro149Pro]
609 .. 609
C/T
rs144028922
+
CDS
Nonsynonymous[Leu154Phe]
617 .. 617
C/T
rs150239100
+
CDS
Synonymous[Asp156Asp]
621 .. 621
C/T
rs138851339
+
CDS
Nonsynonymous[Arg158Trp]
626 .. 626
G/A
rs150723262
+
CDS
Synonymous[Thr159Thr]
638 .. 638
C/T
rs149373911
+
CDS
Synonymous[Leu163Leu]
653 .. 653
C/T
rs75786524
+
CDS
Synonymous[His168His]
688 .. 688
C/T
rs139523036
+
CDS
Nonsynonymous[Thr180Met]
692 .. 692
A/G
rs1042910
+
CDS
Synonymous[Gly181Gly]
759 .. 759
G/A
rs142738715
+
CDS
Nonsynonymous[Ala204Thr]
834 .. 834
C/T
rs28259
-
3'UTR
838 .. 838
A/C
rs201452683
+
3'UTR
843 .. 843
A/T
rs28258
-
3'UTR
868 .. 868
C/T
rs3025288
-
3'UTR
914 .. 914
A/G
rs11871410
+
3'UTR
930 .. 930
C/T
rs28919
+
3'UTR
1057 .. 1057
C/G
rs149484872
+
3'UTR
1154 .. 1154
A/C
rs11080195
-
3'UTR
1197 .. 1197
C/T
rs9772
-
3'UTR
1248 .. 1248
A/G
rs11851
-
3'UTR
1302 .. 1302
G/T
rs143921650
+
3'UTR
1374 .. 1374
G/C
rs112306721
+
3'UTR
1449 .. 1449
C/T
rs11558977
-
3'UTR
1473 ^ 1474
-/A
rs141948577
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MER102a
1098
1353
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;