H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000030669 Accession number: BC001817 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Acyl-CoA dehydrogenase family member 9, mitochondrial; ACAD-9; EC=1.3.99.-; Precursor;
 
 

Transcript original information
Accession number BC001817.2
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:3530094
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 1485[bp] (No. of exon:11)[A:368 T:316 G:417 C:384]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Muscle, rhabdomyosarcoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1440(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0215235
Genomic location  G-integra Help Chromosome 3
Location 3q21.3
Position 128620145- 128631857
Strand +
Possible duplicated location(s) NA
Gene structure 11 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:28976
KEGG GENES KEGG GENES(28976)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000016688
Predicted CDS 1..1032;  343[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.821

Motif information
ORF

length(343),orf(1:1032)
KIPVENILGEVGDGFKVAMNILNSGRFSMGSVVAGLLKRLIEMTAEYACT
RKQFNKRLSEFGLIQEKFALMAQKAYVMESMTYLTAGMLDQPGFPDCSIE
AAMVKVFSSEAAWQCVSEALQILGGLGYTRDYPYERILRDTRILLIFEGT
NEILRMYIALTGLQHAGRILTTRIHELKQAKVSTVMDTVGRRLRDSLGRT
VDLGLTGNHGVVHPSLADSANKFEENTYCFGRTVETLLLRFGKTIMEEQL
VLKRVANILINLYGMTAVLSRASRSIRIGLRNHDHEVLLANTFCVEAYLQ
NLFSLSQLDKYAPENLDEQIKKVSQQILEKRAYICAHPLDRTC*
a.a.
length
InterPro Name
length(150), motif(10:159) 150 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal [Domain]
length(148), motif(12:159) 148 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal [Domain]
length(20), motif(121:140) 20 IPR006089 Acyl-CoA dehydrogenase, conserved site [Conserved_site]
length(73), motif(229:301) 73 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000030669
H-Inv cluster ID Locus viewHIX0215235
Accession number BC001817.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to Acyl-CoA dehydrogenase family member 9, mitochondrial; ACAD-9; EC=1.3.99.-; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9H845)  [Identity/coverage = 100.0%/55.23%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 123592601470203915489334175649661960886121269460ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ ACAD9
UniProt ACAD9
EC number EC 1.3.99.-With other acceptors; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000016688
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:28976
KEGG GENES KEGG GENES(28976)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function acyl-CoA dehydrogenase activity (GO:0003995);  oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytoskeleton; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
1 146 1siqA1 9e-32 24.3 144/154 a.29.3.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA230601; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 224160_s_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 224160_s_at; 
HG-U133_Plus_2 224160_s_at; 
HG-U95 54100_at; 
HG-U95A NA
HG-U95B 54100_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2641362;  2641363;  2641364;  2641366;  2641368;  2641369;  2641372;  2641373;  2641376;  2641377;  2641378;  2641379;  2641380;  2641381;  2641382;  2641383;  2694523; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P191656; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
73 .. 73 G/T rs143383023 + CDS Nonsynonymous[Gly25Cys]
85 .. 85 A/G rs143131090 + CDS Nonsynonymous[Met29Val]
94 .. 94 G/A rs139073821 + CDS Nonsynonymous[Val32Ile]
108 .. 108 G/A rs186489855 + CDS Synonymous[Leu36Leu]
142 .. 142 G/A rs115532916 + CDS Nonsynonymous[Ala48Thr]
154 .. 154 A/C rs79530903 + CDS Nonsynonymous[Lys52Gln]
160 .. 160 T/- rs56211699 + CDS
175 .. 175 A/G rs201248046 + CDS Nonsynonymous[Ser59Gly]
186 .. 186 A/G rs138401844 + CDS Synonymous[Gly62Gly]
188 .. 188 T/C rs141874052 + CDS Nonsynonymous[Leu63Ser]
259 ^ 260 -/G rs35316785 + CDS
348 .. 348 G/T rs150567616 + CDS Synonymous[Val116Val]
369 .. 369 C/T rs192615514 + CDS Synonymous[Leu123Leu]
387 .. 387 A/G rs139048558 + CDS Synonymous[Thr129Thr]
403 .. 403 G/A rs149753643 + CDS Nonsynonymous[Glu135Lys]
424 .. 424 C/T rs202147766 + CDS Nonsynonymous[Arg142Cys]
425 .. 425 G/A rs146270623 + CDS Nonsynonymous[Arg142His]
522 ^ 523 -/C rs35807079 + CDS
553 .. 553 G/A rs113671636 + CDS Nonsynonymous[Val185Ile]
571 .. 571 C/T rs139145143 + CDS Nonsynonymous[Arg191Trp]
572 .. 572 G/A rs200824675 + CDS Nonsynonymous[Arg191Gln]
585 .. 585 C/G rs143991763 + CDS Nonsynonymous[Asp195Glu]
596 .. 596 G/A rs4494951 + CDS Nonsynonymous[Arg199Gln]
631 .. 631 G/A rs143650367 + CDS Nonsynonymous[Val211Ile]
641 .. 641 C/G rs140921856 + CDS Nonsynonymous[Pro214Arg]
642 .. 642 C/T rs876755 + CDS Synonymous[Pro214Pro]
651 .. 651 G/A rs151097457 + CDS Synonymous[Ala217Ala]
691 .. 691 G/A rs141036010 + CDS Nonsynonymous[Gly231Ser]
718 .. 718 C/T rs150283105 + CDS Nonsynonymous[Arg240Cys]
738 .. 738 G/A rs200208702 + CDS Nonsynonymous[Met246Ile]
780 .. 780 C/G rs202183844 + CDS Nonsynonymous[Ile260Met]
797 .. 797 C/T rs199739835 + CDS Nonsynonymous[Thr266Met]
802 .. 802 G/A rs139352788 + CDS Nonsynonymous[Val268Met]
830 .. 830 G/T rs200134546 + CDS Nonsynonymous[Arg277Leu]
841 .. 841 C/A rs138871762 + CDS Nonsynonymous[Arg281Ser]
849 .. 849 C/T rs141647117 + CDS Synonymous[His283His]
882 .. 882 C/T rs147040198 + CDS Synonymous[Cys294Cys]
883 .. 883 G/A rs138264216 + CDS Nonsynonymous[Val295Met]
967 .. 967 G/A rs149595527 + CDS Nonsynonymous[Val323Met]
1063 .. 1063 G/A rs9830739 + 3'UTR
1064 .. 1064 C/T rs200518350 + 3'UTR
1100 .. 1100 C/T rs116106966 + 3'UTR
1123 .. 1123 T/C rs112143521 + 3'UTR
1202 .. 1202 G/A rs113196452 + 3'UTR
1242 .. 1242 C/T rs3183354 + 3'UTR
1253 .. 1253 C/T rs189130789 + 3'UTR
1254 .. 1254 G/A rs113551006 + 3'UTR
1363 .. 1363 T/G rs114763241 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer