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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000031702 Accession number: BC003698 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Acyl-CoA dehydrogenase family member 10; ACAD-10; EC=1.3.99.-;
 
 

Transcript original information
Accession number BC003698.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:3461017
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ACAD10) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ACAD10);
Sequence data provider NA
Annotation project NA
Length of cDNA 2879[bp] (No. of exon:17)[A:702 T:631 G:785 C:761]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Cervix, carcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 2861(+) Signal: 2837-2841(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGAAG;  TAGGAG; 
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0011001
Genomic location  G-integra Help Chromosome 12
Location 12q24.12
Position 112147442- 112194903
Strand +
Possible duplicated location(s) NA
Gene structure 17 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:80724
KEGG GENES KEGG GENES(80724)
GeneCard GeneCardACAD10*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000130266
Predicted CDS 3..2744;  913[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.768

Motif information
ORF

length(913),orf(3:2744)
TNLKEAARLGIHTIKVNDPETAVKELEALLGFTLRVGVPNTRPVKKTMEI
PKDSLQKYLKDLLGIQTTGPLELLQFDHGQSNPTYYIRLANRDLVLRKKP
PGTLLPSAHAIEREFRIMKALANAGVPVPNVLDLCEDSSVIGTPFYVMEY
CPGLIYKDPSLPGLEPSHRRAIYTAMNTVLCKIHSVDLQAVGLEDYGKQG
DYIPRQVRTWVKQYRASETSTIPAMERLIEWLPLHLPRQQRTTVVHGDFR
LDNLVFHPEEPEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPVLRGI
NDCDLTQLGIPAAEEYFRMYCLQMGLPPTENWNFYMAFSFFRVAAILQGV
YKRSLTGQASSTYAEQTGKLTEFVSNLAWDFAVKEGFRVFKEMPFTNPLT
RSYHTWARPQSQWCPTGSRSYSSVPEASPAHTSRGGLVISPESLSPPVRE
LYHRLKHFMEQRVYPAEPELQSHQASAARWSPSPLIEDLKEKAKAEGLWN
LFLPLEADPEKKYGAGLTNVEYAHLCELMGTSLYAPEVCNCSAPDTGNME
LLVRYGTEAQKARWLIPLLEGKARSCFAMTEPQVASSDATNIEASIREED
SFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHRQQSVLLVPMDTPG
IKIIRPLTVYGLEDAPGGHGEVRFEHVRVPKENMVLGPGRGFEIAQGRLG
PGRIHHCMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRV
EIEQARLLVLRAAHLMDLAGNKAAALDIAMIKMVAPSMASRVIDRAIQKT
SLQEAWSLFQARRRGFAEGQGGSGTESGKLVFRLSVPGWAGTVTSLQPFS
PSLSACGNLDTFWEASQGCGTCLLWQLQGSCLASLVSRGAATAGGGLETQ
DLGAWENGMQPTL*
a.a.
length
InterPro Name
length(318), motif(49:366) 318 IPR011009 Protein kinase-like domain [Domain]
length(215), motif(74:288) 215 IPR002575 Aminoglycoside phosphotransferase [Domain]
length(261), motif(442:702) 261 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain [Domain]
length(130), motif(444:573) 130 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal [Domain]
length(124), motif(449:572) 124 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal [Domain]
length(104), motif(575:678) 104 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain [Domain]
length(55), motif(576:630) 55 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain [Domain]
length(111), motif(688:798) 111 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal [Domain]
length(110), motif(689:798) 110 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000031702
H-Inv cluster ID Locus viewHIX0011001
Accession number BC003698.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Acyl-CoA dehydrogenase family member 10; ACAD-10; EC=1.3.99.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q6JQN1)  [Identity/coverage = 100.0%/75.35%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 147020391548933415560374165410751797400521237683ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ACAD10
HGNC aliases "acyl-Coenzyme A dehydrogenase family, member 10"
HGNC name acyl-CoA dehydrogenase family, member 10
DDBJ NA
UniProt ACAD10
EC number EC 1.3.99.-With other acceptors; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000130266
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:80724
KEGG GENES KEGG GENES(80724)
GeneCard GeneCardACAD10*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function acyl-CoA dehydrogenase activity (GO:0003995);  FAD binding (GO:0050660);  transferase activity, transferring phosphorus-containing groups (GO:0016772);  oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627); 
Biological process metabolic process (GO:0008152); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol;  mitochondria; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
21 244 1nd4A 4e-21 18.8 213/255 d.144.1.6
397 638 1rx0A2 2e-39 22.4 219/231 e.6.1.1
645 751 1siqA1 5e-20 22.9 105/154 a.29.3.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL kidney/bladder; 
Probe
information DNAProbeLocator
AceGene AGhsA061116; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 219986_s_at;  237482_s_at; 
HG-U133A 219986_s_at; 
HG-U133A_2 219986_s_at; 
HG-U133B 237482_s_at; 
HG-U133_Plus_2 219986_s_at;  237482_s_at; 
HG-U95 58829_at;  64881_at;  71210_at;  71212_at;  86412_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 58829_at;  64881_at; 
HG-U95D NA
HG-U95E 71210_at;  71212_at;  86412_at; 
HG-U95Av2 NA
HuEx-1_0 3432045;  3432051;  3432052;  3432054;  3432056;  3432058;  3432059;  3432060;  3432061;  3432063;  3432064;  3432066;  3432067;  3432071;  3432078;  3432081;  3432086;  3432087;  3471740; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P25351; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P25348;  A_24_P227450;  A_24_P8284; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
3 .. 3 A/C rs35753710 + CDS Nonsynonymous[Thr1Pro]
13 .. 13 A/G rs148269182 + CDS Nonsynonymous[Lys4Arg]
111 .. 111 G/T rs150051004 + CDS Nonsynonymous[Gly37Cys]
154 .. 154 C/T rs145407775 + CDS Nonsynonymous[Pro51Leu]
192 .. 192 G/C rs148815703 + CDS Nonsynonymous[Gly64Arg]
206 .. 206 A/G rs146934590 + CDS Synonymous[Thr68Thr]
211 .. 211 C/G rs137994931 + CDS Nonsynonymous[Pro70Arg]
213 .. 213 T/C rs142116766 + CDS Synonymous[Leu71Leu]
257 .. 257 C/T rs145937984 + CDS Synonymous[Tyr85Tyr]
277 .. 277 G/A rs200875074 + CDS Nonsynonymous[Arg92His]
326 .. 326 C/G rs112990162 + CDS Synonymous[Ala108Ala]
344 .. 344 G/A rs142530356 + CDS Synonymous[Glu114Glu]
366 .. 366 G/T rs192640383 + CDS Nonsynonymous[Ala122Ser]
399 .. 399 G/A rs150790771 + CDS Nonsynonymous[Asp133Asn]
428 .. 428 C/T rs138096024 + CDS Synonymous[Gly142Gly]
437 .. 437 C/T rs149558852 + CDS Synonymous[Phe145Phe]
472 .. 472 A/G rs200607092 + CDS Nonsynonymous[Lys157Arg]
497 ^ 498 -/C rs138876094 + CDS
509 .. 509 A/G rs35358426 + CDS Synonymous[Arg169Arg]
516 .. 516 A/G rs140075311 + CDS Nonsynonymous[Ile172Val]
564 .. 564 C/G rs11066013 + CDS Nonsynonymous[Leu188Val]
594 .. 594 A/C rs143739010 + CDS Nonsynonymous[Lys198Gln]
631 .. 631 G/A rs199879065 + CDS AA-STOP[Trp210*]
645 .. 645 C/T rs146335507 + CDS AA-STOP[Arg215*]
654 .. 654 G/A rs200769692 + CDS Nonsynonymous[Glu218Lys]
674 .. 674 C/T rs200515277 + CDS Synonymous[Ala224Ala]
690 .. 690 G/A rs148547215 + CDS Nonsynonymous[Glu230Lys]
696 .. 696 C/T rs142933086 + CDS Synonymous[Leu232Leu]
701 .. 701 C/T rs202003128 + CDS Synonymous[Pro233Pro]
706 .. 706 A/G rs151106801 + CDS Nonsynonymous[His235Arg]
723 .. 723 A/G rs141115291 + CDS Nonsynonymous[Arg241Gly]
728 .. 728 C/T rs145027535 + CDS Synonymous[Thr242Thr]
744 .. 744 G/A rs36046440 + CDS Nonsynonymous[Asp248Asn]
755 .. 755 C/T rs35268705 + CDS Synonymous[Leu251Leu]
762 .. 762 C/G rs141973586 + CDS Nonsynonymous[Leu254Val]
809 .. 809 G/A rs200301785 + CDS AA-STOP[Trp269*]
843 .. 843 G/A rs200923059 + CDS Nonsynonymous[Val281Met]
844 .. 844 T/G rs201719680 + CDS Nonsynonymous[Val281Gly]
851 .. 851 C/T rs145824704 + CDS Synonymous[Tyr283Tyr]
855 .. 855 T/C rs199529402 + CDS Nonsynonymous[Cys285Arg]
890 .. 890 G/T rs145524708 + CDS Synonymous[Val296Val]
958 .. 958 T/C rs200513101 + CDS Nonsynonymous[Met319Thr]
995 .. 995 C/G rs148867702 + CDS Nonsynonymous[Asn331Lys]
1027 .. 1027 G/A rs34912642 + CDS Nonsynonymous[Arg342His]
1028 .. 1028 T/A rs78112811 + CDS Synonymous[Arg342Arg]
1036 .. 1036 C/G rs35716113 + CDS Nonsynonymous[Ala345Gly]
1090 .. 1090 A/G rs192237004 + CDS Nonsynonymous[Tyr363Cys]
1188 .. 1188 A/G rs142709066 + CDS Nonsynonymous[Thr396Ala]
1208 .. 1208 C/T rs144975580 + CDS Synonymous[Ser402Ser]
1210 .. 1210 A/G rs138790472 + CDS Nonsynonymous[Tyr403Cys]
1234 .. 1234 C/T rs141959148 + CDS Nonsynonymous[Ser411Phe]
1237 .. 1237 A/T rs112401787 + CDS Nonsynonymous[Gln412Leu]
1272 .. 1272 G/A rs139313175 + CDS Nonsynonymous[Val424Ile]
1300 .. 1300 C/G rs201684179 + CDS AA-STOP[Ser433*]
1317 .. 1317 A/G rs149610201 + CDS Nonsynonymous[Ile439Val]
1335 .. 1335 T/C rs34486571 + CDS Nonsynonymous[Ser445Pro]
1339 .. 1339 C/T rs144351777 + CDS Nonsynonymous[Pro446Leu]
1376 .. 1376 C/G rs148795385 + CDS Nonsynonymous[Phe458Leu]
1385 .. 1385 A/G rs201272990 + CDS Synonymous[Gln461Gln]
1445 .. 1445 C/G rs144887834 + CDS Nonsynonymous[Ser481Arg]
1461 .. 1461 G/A rs147958599 + CDS Nonsynonymous[Glu487Lys]
1529 .. 1529 C/T rs116187125 + CDS Synonymous[Pro509Pro]
1537 .. 1537 A/G rs200585723 + CDS Nonsynonymous[Lys512Arg]
1552 .. 1552 T/C rs144218728 + CDS Nonsynonymous[Leu517Pro]
1558 .. 1558 A/G rs151165360 + CDS Nonsynonymous[Asn519Ser]
1592 .. 1592 C/T rs140224864 + CDS Synonymous[Gly530Gly]
1611 .. 1611 G/A rs150349412 + CDS Nonsynonymous[Glu537Lys]
1626 .. 1626 T/C rs143862876 + CDS Nonsynonymous[Ser542Pro]
1640 .. 1640 G/T rs141019211 + CDS Synonymous[Thr546Thr]
1652 .. 1652 G/A rs200340867 + CDS Synonymous[Glu550Glu]
1689 .. 1689 C/T rs190926321 + CDS Nonsynonymous[Arg563Cys]
1742 .. 1742 C/T rs144834684 + CDS Synonymous[Thr580Thr]
1776 .. 1776 A/G rs138769725 + CDS Nonsynonymous[Ile592Val]
1819 .. 1819 A/T rs141918583 + CDS Nonsynonymous[Asn606Ile]
1821 .. 1821 G/A rs143673663 + CDS Nonsynonymous[Gly607Ser]
1870 .. 1870 G/T rs148107230 + CDS Nonsynonymous[Cys623Phe]
1911 .. 1911 C/T rs141914437 + CDS Nonsynonymous[Arg637Trp]
1975 .. 1975 C/T rs150643910 + CDS Nonsynonymous[Thr658Met]
1996 .. 1996 C/T rs34245489 + CDS Nonsynonymous[Ala665Val]
2001 .. 2001 G/C rs143237254 + CDS Nonsynonymous[Gly667Arg]
2007 .. 2007 C/T rs147418170 + CDS Nonsynonymous[His669Tyr]
2020 .. 2020 G/T rs200819090 + CDS Nonsynonymous[Arg673Leu]
2050 .. 2050 A/G rs138044386 + CDS Nonsynonymous[Asn683Ser]
2095 ^ 2096 -/T rs34650888 + CDS
2145 .. 2145 G/T rs144180377 + CDS AA-STOP[Glu715*]
2163 .. 2163 A/G rs145484987 + CDS Nonsynonymous[Met721Val]
2164 .. 2164 T/C rs199993809 + CDS Nonsynonymous[Met721Thr]
2165 .. 2165 G/A rs149500655 + CDS Nonsynonymous[Met721Ile]
2173 .. 2173 G/T rs75655687 + CDS Nonsynonymous[Arg724Leu]
2174 .. 2174 C/T rs144749824 + CDS Synonymous[Arg724Arg]
2179 .. 2179 A/C rs143391323 + CDS Nonsynonymous[Lys726Thr]
2239 .. 2239 C/T rs146750873 + CDS Nonsynonymous[Ala746Val]
2240 .. 2240 A/G rs2074055 - CDS Synonymous[Ala746Ala]
2246 .. 2246 G/A/T rs150401317 + CDS
2247 .. 2247 C/T rs138121268 + CDS Nonsynonymous[Arg749Cys]
2262 .. 2262 C/T rs202210590 + CDS AA-STOP[Gln754*]
2263 .. 2263 A/T rs200469515 + CDS Nonsynonymous[Gln754Leu]
2268 .. 2268 C/T rs80294185 + CDS Nonsynonymous[Arg756Trp]
2317 .. 2317 A/C rs143276470 + CDS Nonsynonymous[Lys772Thr]
2365 .. 2365 T/C rs139160341 + CDS Nonsynonymous[Met788Thr]
2373 .. 2373 C/T rs115809570 + CDS AA-STOP[Arg791*]
2378 .. 2378 G/A rs145136900 + CDS Synonymous[Val792Val]
2505 .. 2505 T/C rs14630 + CDS Nonsynonymous[Ser835Pro]
2684 .. 2684 T/C rs739580 + CDS Synonymous[Gly894Gly]
2694 .. 2694 G/A rs2339839 + CDS Nonsynonymous[Glu898Lys]
2705 .. 2705 C/A rs111761557 + CDS Nonsynonymous[Asp901Glu]
2763 .. 2763 A/G rs149114814 + 3'UTR
2838 .. 2838 A/G rs143161383 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer