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H-Invitational ID: HIT000033698 Accession number: BC008285 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Coiled-coil domain-containing protein 102A;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number BC008285.1 CAGE tag ID NA EST ID NA Clone Number MGC:10992 IMAGE:3637387 Experimental resources   NBRC ; HGPD ; Antibody (CCDC102A) ; Catalog (CCDC102A); Sequence data provider Provider:MGC/NCI;  Annotation project H-Invitational FLcDNA Length of cDNA 2328[bp] (No. of exon:9)[A:512 T:290 G:828 C:698] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Placenta, choriocarcinoma Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 2284(+) Signal: 2265-2269(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) TAGGAG;  Transcript quality feature NA Notes NA

GCCGCAGCGGCTGGGACGTACGGAGCCCGCAAGTCCCGGCCCGAGGTCCG AGGAGGCGTCCTCCGCCCGGTGGCCCAGAGGGAAGCGGGGCACGGCGTCA TCATGCACAGTTGTATCGCGCCCGCCGCGCGTCCCCGGAGCCGCCCCTGA GCCCGACCGCGAGTTCGAGCTCAGGGCCCGCCCGGCCGCACCATGAGCCA CGGGCCCAGCCCCCGGCTGGCCGAGTCCCCGCAGCTGTCCAAGGGCAGCC TCCTGACCATCCTGGGCAGCCCGTCGCCGGAGCGCATGGGGCCTGCCGAC TCCTTGCCGCCCACGCCGCCCAGCGGCACGCCCTCGCCCGGGCCGCCGCC CGCACTGCCCCTGCCCCCCGCGCCCGCGCTGCTGGCCGACGGCGACTGGG AGAGCCGCGAGGAGCTGCGGCTGCGGGAGCTGGAGGAGGCGCGGGCGCGG GCGGCGCAGATGGAGAAGACCATGCGCTGGTGGTCGGACTGCACTGCCAA TTGGCGCGAGAAATGGAGCAAGGTGCGCGCTGAGCGCAACCGCGCGCGCG AGGAGGTGCGCCAGCTGCGCCAGCGCCTGGACGCGCTCACCAAGGAGCTG GCGGGCGCACGGCGCGAGCGCCAAGAGGCGCAGGGCGAGTGCGAGGCACG GGGCCGCGAGCTGGCGCGGCTGAGGGGCGCCCGGGGGGTCGCCGACCAGA CGCGCGACGGCCCCGAGCCGGAAGCGGAGCGCGAGCCAGTGCGTGACGTC GGGTCCGAGAGGCCGCCAGGCAGCCAGGAACTGGAGCTGGTGGAGAGCCT GCTGAAGAGCATGCCAGAGGAGTCTGAGGACTGCTGGGAGGCGCGCAGCC TGGGGGCTGGGGGCCCGCGGGGCAGCTCAGGCCGCCAGGAGCGCAGCCGG CTACCCTGGGAGGACACAGCTGCCACGGAGGAGGAGGCCTCCAAGTTGAC CGCCCTGCGGCTACGGCTGGATGAGTCCCAGAAGGTGCTGCTCAAGGAGC GAGAGGATAAACTGGCGTTGAGCAGGAACATTGAGAAGCTAGAGGGGGAG CTCAGCCAGTGGAAGATCAAGTATGAGGAGCTGAGCAAGACCAAGCAGGA GATGCTCAAGCAGCTCAGCATCCTGAAGGAGGCGCACCAGGACGAGCTGG GCCGCATGTCTGAGGACCTGGAAGATGAGCTCGGTGCACGCTCCAGCATG GACCGGAAAATGGCCGAGCTGAGGGGCGAGATGGAGCGGCTGCAGGCCGA AAACGCTGCGGAGTGGGGCCGCCGGGAGCGGCTGGAGACAGAGAAACTGG GCCTTGAGCGGGAGAACAAGAAGCTGCGGGCACAGGTCGGAGACCTGGAG GAGGCGCTGGCCCGGCGGCGGCGGCAAACAGCCAGCGCACTGGACTGCGA CCTGAGGGCCAGCCAGGCCGCGCTCTTCGAGAAGAACAAGGAGCTGGCAG ACCTGAAGCATGTGCATGGCAAGCTGAAGAAGCAGTTCCAGGAGAAGGTG GCAGAGCTGGCACATGCCAACCGGCGGGTGGAGCAGCACGAGGCTGAGGT GAAGAAGCTGCGGCTGCGGGTGGAGGAGCTCAAGAAGGAGCTGGCCCAGG CTGAGGACGAGCTGGACGAGGCCCACAACCAGGCACGTAAGCTGCAGCGG TCGCTGGACGAGCAGACGGAGCAGAGCGAGAACCTGCAAGTGCAACTGGA GCACCTGCAGTCCAGGCTCCGCAGGCAGCAGCAGAACGCTCCCCTCTTCG GGAAGATCCGCAGTGCTCGCTTTGGCACCGAGGAGGCCGAGGATGGAACC AGTGACCTGGACGAGGACGAGGACCTGCAAATCCAGGTGGCCTAGAGCTT CCTGTGGCTGGGCAGGATGGGCCGCCCCATACCTGCCCAGGGTCCAGGCT AACCAGCCACTCAAACTGATGCAGTGCCTAGGCTCACTCTGGGACCAGTC CCTGCCACAGCCGACTTTCTTCTCTCCCAGGGATGGCGTCAACAGTCCCA CCTACCAACGCCCTGTGGAAAGGAAGCCTATGTTTTATATATATATATAC ACACACGCGCGCGCGCGCGCGCACACCCAGAAGTCTTTGGACCCATTTGG TTTTATAAATACAGGACAGCTCCAAGGCCCAGTCCAGATGACCTCACCCA CCCAGGACTTCATGCAGGGCTGGGCATGTTGGGGGCAGTTGTTGGAGCCC CACCCTGGGCTGCCTCTCTAGGCTTCGCTGTTCATCATACAATGCAGTGA ACCCAGTTATTTGTAATAAATGAAGTTCAAGTTAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0013076
Genomic location	Chromosome	16
	Location	16q21
	Position	57546215- 57570456
	Strand	-
Possible duplicated location(s)		NA
Gene structure		9 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:92922;
	KEGG GENES	KEGG GENES(92922);
	GeneCard	CCDC102A;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000098725 Predicted CDS 193..1845;  550[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.834

MSHGPSPRLAESPQLSKGSLLTILGSPSPERMGPADSLPPTPPSGTPSPG PPPALPLPPAPALLADGDWESREELRLRELEEARARAAQMEKTMRWWSDC TANWREKWSKVRAERNRAREEVRQLRQRLDALTKELAGARRERQEAQGEC EARGRELARLRGARGVADQTRDGPEPEAEREPVRDVGSERPPGSQELELV ESLLKSMPEESEDCWEARSLGAGGPRGSSGRQERSRLPWEDTAATEEEAS KLTALRLRLDESQKVLLKEREDKLALSRNIEKLEGELSQWKIKYEELSKT KQEMLKQLSILKEAHQDELGRMSEDLEDELGARSSMDRKMAELRGEMERL QAENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRRRQTASAL DCDLRASQAALFEKNKELADLKHVHGKLKKQFQEKVAELAHANRRVEQHE AEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQTEQSENLQV QLEHLQSRLRRQQQNAPLFGKIRSARFGTEEAEDGTSDLDEDEDLQIQVA *

Gene function information

H-Inv ID		HIT000033698
H-Inv cluster ID		HIX0013076
Accession number		BC008285.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Coiled-coil domain-containing protein 102A;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q96A19)  [Identity/coverage = 99.818%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence		Protein evidence
PubMed ID		15489334;  15616553;  18669648;  20068231;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	CCDC102A
	HGNC aliases	NA
	HGNC name	coiled-coil domain containing 102A
	DDBJ	CCDC102A
	UniProt	CCDC102A
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000098725
	No. of interaction	2
	Interaction partner(s)	HIP000033499;  HIP000137093;
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:92922;
	KEGG GENES	KEGG GENES(92922);
	GeneCard	CCDC102A;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:27-May-2015

WoLF PSORT	nuclear;  cytosol;  mitochondria;
Target P	Not predicted
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			NA
Probe information	AceGene		AGhsB130421;
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	232051_at;
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	232051_at;
		HG-U133_Plus_2	232051_at;
		HG-U95	77539_at;
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	77539_at;
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3693246;  3693247;  3693248;  3693249;  3693250;  3693253;  3693254;  3693255;  3693257;  3693260;  3693261;  3693262;  3693265;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P65983;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P65983;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 137 .. 137 G/T rs181771323 - 5'UTR 171 .. 171 T/C rs4784815 - 5'UTR 309 .. 309 G/A rs79928291 - CDS Synonymous[Pro39Pro] 443 .. 443 G/A rs202154704 - CDS Nonsynonymous[Arg84Gln] 477 .. 477 C/T rs17845157 - CDS Synonymous[Arg95Arg] 478 .. 478 T/C rs12935069 - CDS Nonsynonymous[Trp96Arg] 610 .. 610 C/A rs192319254 - CDS Synonymous[Arg140Arg] 619 .. 619 C/T rs112087576 - CDS Nonsynonymous[Arg143Cys] 741 .. 741 G/A rs146791662 - CDS Synonymous[Val183Val] 870 .. 870 G/A rs112012472 - CDS Synonymous[Arg226Arg] 876 .. 876 C/T rs185726595 - CDS Synonymous[Ser228Ser] 884 .. 884 G/T rs140486249 - CDS Nonsynonymous[Arg231Leu] 891 .. 891 G/T rs146826598 - CDS Nonsynonymous[Glu233Asp] 892 .. 892 C/G rs145049485 - CDS Nonsynonymous[Arg234Gly] 893 .. 893 G/C/A rs141272360 - CDS 899 .. 899 G/A rs151092408 - CDS Nonsynonymous[Arg236Gln] 930 .. 930 G/A rs142906295 - CDS Synonymous[Glu246Glu] 964 .. 964 C/T rs138430955 - CDS Nonsynonymous[Arg258Trp] 971 .. 971 A/G rs79054675 - CDS Nonsynonymous[Asp260Gly] 977 .. 977 C/A rs145855529 - CDS Nonsynonymous[Ser262Tyr] 1017 .. 1017 G/A rs28446687 - CDS Synonymous[Ala275Ala] 1024 .. 1024 A/G rs140290061 - CDS Nonsynonymous[Arg278Gly] 1026 .. 1026 G/A rs201630960 - CDS Synonymous[Arg278Arg] 1068 .. 1068 C/T rs147179404 - CDS Synonymous[Ile292Ile] 1099 .. 1099 G/A rs143525658 - CDS Nonsynonymous[Glu303Lys] 1133 .. 1133 C/T rs61754870 - CDS Nonsynonymous[Ala314Val] 1134 .. 1134 G/A rs150775326 - CDS Synonymous[Ala314Ala] 1143 .. 1143 C/T rs141241860 - CDS Synonymous[Asp317Asp] 1209 .. 1209 A/G rs199604828 - CDS Synonymous[Lys339Lys] 1221 .. 1221 G/A rs148280040 - CDS Synonymous[Leu343Leu] 1227 .. 1227 C/T rs200601259 - CDS Synonymous[Gly345Gly] 1255 .. 1255 G/A rs144125982 - CDS Nonsynonymous[Ala355Thr] 1271 .. 1271 G/A rs201621400 - CDS Nonsynonymous[Arg360His] 1279 .. 1279 C/T rs201796906 - CDS Nonsynonymous[Arg363Trp] 1306 .. 1306 G/A rs200849047 - CDS Nonsynonymous[Glu372Lys] 1310 .. 1310 G/A rs201369504 - CDS Nonsynonymous[Arg373Gln] 1332 .. 1332 A/T/G rs28756858 - CDS 1338 .. 1338 C/T rs138815144 - CDS Synonymous[Val382Val] 1339 .. 1339 G/A rs144945819 - CDS Nonsynonymous[Gly383Arg] 1370 .. 1370 G/A rs141307368 - CDS Nonsynonymous[Arg393Gln] 1373 .. 1373 G/A rs201936316 - CDS Nonsynonymous[Arg394Gln] 1396 .. 1396 T/C rs138196312 - CDS Nonsynonymous[Cys402Arg] 1398 .. 1398 C/T rs202155801 - CDS Synonymous[Cys402Cys] 1423 .. 1423 C/T rs150464217 - CDS Nonsynonymous[Leu411Phe] 1428 .. 1428 C/T rs140543635 - CDS Synonymous[Phe412Phe] 1429 .. 1429 G/A rs199982491 - CDS Nonsynonymous[Glu413Lys] 1485 .. 1485 G/A rs74901418 - CDS Synonymous[Gln431Gln] 1494 .. 1494 G/T rs141637519 - CDS Nonsynonymous[Glu434Asp] 1523 .. 1523 G/A rs144924841 - CDS Nonsynonymous[Arg444Gln] 1573 .. 1573 G/A rs200970733 - CDS Nonsynonymous[Glu461Lys] 1609 .. 1609 G/A rs201471656 - CDS Nonsynonymous[Glu473Lys] 1617 .. 1617 C/T rs199963764 - CDS Synonymous[Asp475Asp] 1630 .. 1630 C/G rs142588247 - CDS Nonsynonymous[Gln480Glu] 1653 .. 1653 G/A rs61749595 - CDS Synonymous[Ser487Ser] 1659 .. 1659 C/T rs143437166 - CDS Synonymous[Asp489Asp] 1674 .. 1674 G/A rs71387171 - CDS Synonymous[Gln494Gln] 1759 .. 1759 C/T rs144990758 - CDS Nonsynonymous[Arg523Cys] 1769 .. 1769 G/A rs200966797 - CDS Nonsynonymous[Arg526His] 1807 .. 1807 C/A rs189560794 - CDS Nonsynonymous[Leu539Met] 1902 .. 1902 A/C rs201608804 - 3'UTR 1962 .. 1962 C/T rs185046202 - 3'UTR 2010 .. 2010 G/A rs191377304 - 3'UTR 2048 .. 2048 T/C rs9936078 - 3'UTR 2055 .. 2055 A/G rs72791604 - 3'UTR 2055 ^ 2056 -/CACG rs60155416 - 3'UTR 2056 ^ 2057 -/ACGC rs150669592 - 3'UTR 2057 .. 2057 G/A rs79482887 - 3'UTR 2058 .. 2058 C/T rs113455400 - 3'UTR 2060 .. 2060 C/T rs186910892 - 3'UTR 2068 .. 2068 C/T rs147299726 - 3'UTR 2071 .. 2071 G/A rs11860814 - 3'UTR 2071 ^ 2072 -/GCGC rs71691865 - 3'UTR 2076 ^ 2077 -/AC rs200214918 - 3'UTR 2195 .. 2195 G/T rs183288284 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;