H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
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Definition*
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---
CCDS ID
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HGNC gene name*
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H-Invitational ID:
HIT000034397
Accession number:
BC009483
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Interferon regulatory factor 1; IRF-1;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC009483.2
CAGE tag ID
NA
EST ID
NA
Clone Number
MGC:15355 IMAGE:3623414
Experimental resources
NBRC
;
HGPD
;
Antibody (IRF1)
;
Catalog (IRF1)
;
Sequence data provider
Provider:
MGC/NCI
;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2061[bp] (No. of exon:10)[A:497 T:425 G:556 C:583]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Pancreas, adenocarcinoma
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 2044(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
CAGGAG;
Transcript quality feature
NA
Notes
NA
GTGCGCCCGAGCCCCGCCGAAGCGAGGCCACCCGGAGCCGTGCCCAGTCC ACGCCGGCCGTGCCCGGCGGCCTTAAGAACCCGGCAACCTCTGCCTTCTT CCCTCTTCCACTTGGAGTCGCGCTCCGCGCGCCCTCACTGCAGCCCCTGC GTCGCCGGGACCCTCGCGCGCGACCGCCGAATCGCTCCTGCAGCAGAGCC AACATGCCCATCACTCGGATGCGCATGAGACCCTGGCTAGAGATGCAGAT TAATTCCAACCAAATCCCGGGGCTCATCTGGATTAATAAAGAGGAGATGA TCTTCCAGATCCCATGGAAGCATGCTGCCAAGCATGGCTGGGACATCAAC AAGGATGCCTGTTTGTTCCGGAGCTGGGCCATTCACACAGGCCGATACAA AGCAGGGGAAAAGGAGCCAGATCCCAAGACGTGGAAGGCCAACTTTCGCT GTGCCATGAACTCCCTGCCAGATATCGAGGAGGTGAAAGACCAGAGCAGG AACAAGGGCAGCTCAGCTGTGCGAGTGTACCGGATGCTTCCACCTCTCAC CAAGAACCAGAGAAAAGAAAGAAAGTCGAAGTCCAGCCGAGATGCTAAGA GCAAGGCCAAGAGGAAGTCATGTGGGGATTCCAGCCCTGATACCTTCTCT GATGGACTCAGCAGCTCCACTCTGCCTGATGACCACAGCAGCTACACAGT TCCAGGCTACATGCAGGACTTGGAGGTGGAGCAGGCCCTGACTCCAGCAC TGTCGCCATGTGCTGTCAGCAGCACTCTCCCCGACTGGCACATCCCAGTG GAAGTTGTGCCGGACAGCACCAGTGATCTGTACAACTTCCAGGTGTCACC CATGCCCTCCACCTCTGAAGCTACAACAGATGAGGATGAGGAAGGGAAAT TACCTGAGGACATCATGAAGCTCTTGGAGCAGTCGGAGTGGCAGCCAACA AACGTGGATGGGAAGGGGTACCTACTCAATGAACCTGGAGTCCAGCCCAC CTCTGTCTATGGAGACTTTAGCTGTAAGGAGGAGCCAGAAATTGACAGCC CAGGGGGGGATATTGGGCTGAGTCTACAGCGTGTCTTCACAGATCTGAAG AACATGGATGCCACCTGGCTGGACAGCCTGCTGACCCCAGTCCGGTTGCC CTCCATCCAGGCCATTCCCTGTGCACCGTAGCAGGGCCCCTGGGCCCCTC TTATTCCTCTAGGCAAGCAGGACCTGGCATCATGGTGGATATGGTGCAGA GAAGCTGGACTTCTGTGGGCCCCTCAACAGCCAAGTGTGACCCCACTGCC AAGTGGGGATGGGGCCTCCCTCCTTGGGTCATTGACCTCTCAGGGCCTGG CAGGCCAGTGTCTGGGTTTTTCTTGTGGTGTAAAGCTGGCCCTGCCTCCT GGGAAGATGAGGTTCTGAGACCAGTGTATCAGGTCAGGGACTTGGACAGG AGTCAGTGTCTGGCTTTTTCCTCTGAGCCCAGCTGCCTGGAGAGGGTCTC GCTGTCACTGGCTGGCTCCTAGGGGAACAGACCAGTGACCCCAGAAAAGC ATAACACCAATCCCAGGGCTGGCTCTGCACTAAGAGAAAATTGCACTAAA TGAATCTCGTTCCCAAAGAACTACCCCCTTTTCAGCTGAGCCCTGGGGAC TGTTCCAAAGCCAGTGAAATGTGAAGGAAAGTGGGGTCCTTCGGGGCGAT GCTCCCTCAGCCTCAGAGGAGCTCTACCCTGCTCCCTGCTTTGGCTGAGG GGCTTGGGAAAAAAACTTGGCACTTTTTCGTGTGGATCTTGCCACATTTC TGATCAGAGGTGTACACTAACATTTCCCCCGAGCTCTTGGCCTTTGCATT TATTTATACAGTGCCTTGCTCGGCGCCCACCACCCCCTCAAGCCCCAGCA GCCCTCAACAGGCCCAGGGAGGGAAGTGTGAGCGCCTTGGTATGACTTAA AATTGGAAATGTCATCTAACCATTAAGTCATGTGTGAACACATAGGACGT GTGTAAATATGTACATTTGTCTTTTTATAAAAAGTAAATTGTTAAAAAAA AAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0005159
Genomic location
Chromosome
5
Location
5q31.1
Position
131818780- 131826434
Strand
-
Possible duplicated location(s)
NA
Gene structure
10 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3659
;
KEGG GENES
KEGG GENES(3659)
;
GeneCard
IRF1
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000084307
Predicted CDS
204..1181; 325[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.823
Database links
RefSeq
NP_002189
;
UniProt
P10914
;
CCDS
CCDS4155
;
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK DACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRN KGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSD GLSSSTLPDDHSSYTVPGYMQDLEVEQALTPALSPCAVSSTLPDWHIPVE VVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKLLEQSEWQPTN VDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN MDATWLDSLLTPVRLPSIQAIPCAP*
Motif information
a.a.
length
InterPro
Name
113
IPR011991
Winged helix-turn-helix DNA-binding domain [Domain]
114
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
109
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
20
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
34
IPR019817
Interferon regulatory factor, conserved site [Conserved_site]
14
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
18
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
23
IPR001346
Interferon regulatory factor DNA-binding domain [Domain]
Gene function information
H-Inv ID
HIT000034397
H-Inv cluster ID
HIX0005159
Accession number
BC009483.2
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Splicing isoform
Coding potential
Protein coding;
Definition
Interferon regulatory factor 1; IRF-1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
P10914
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
1382447
;
2726461
;
3409321
;
8438156
;
9679752
;
10094406
;
10395927
;
11244049
;
11846971
;
11846974
;
15226432
;
15489334
;
15509808
;
16932750
;
17516545
;
17942705
;
18084608
;
18497060
;
18641303
;
19404407
;
19851330
;
20049431
;
21389130
;
22200613
;
22367195
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
IRF1
HGNC aliases
NA
HGNC name
interferon regulatory factor 1
DDBJ
IRF1
UniProt
IRF1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000084307
No. of interaction
12
Interaction partner(s)
HIP000026951
;
HIP000027985
;
HIP000069516
;
HIP000085289
;
HIP000095247
;
HIP000096767
;
HIP000106166
;
HIP000106166
;
HIP000106180
;
HIP000136362
;
HIP000148140
;
HIP000148140
;
BIND
NA
DIP
115228E; 88067E; 88068E;
MINT
NA
HPRD
01238; 01241; 02777; 02829; 02867; 03336; 03554; 04078; 06780; 07223; 08931; 10556;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3659
;
KEGG GENES
KEGG GENES(3659)
;
GeneCard
IRF1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
transcription factor activity (
GO:0003700
);
Biological process
regulation of transcription, DNA-dependent (
GO:0006355
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
7
111
1if1A
9e-47
100.0
105/105
a.4.5.23
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA220418;
Affymetrix
GeneChip
HG-Focus
202531_at;
HG-U133
202531_at;
HG-U133A
202531_at;
HG-U133A_2
202531_at;
HG-U133B
NA
HG-U133_Plus_2
202531_at;
HG-U95
669_s_at;
HG-U95A
669_s_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2828595; 2875350; 2875351; 2875353; 2875356; 2875358; 2875360; 2875362; 2875363; 2875364; 2875365; 2875366; 2875372; 2875375;
HuGeneFL
L05072_s_at;
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P41765;
Whole Human Genome Oligo Microarray:PGID247
A_23_P41765;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Disease/pathology information
Last modified:27-May-2015
Disease relation
Disease name: Gastric cancer (
137215
); Disease name: Macrocytic anemia, refractory, of 5q- syndrome (
153550
);
Related information in OMIM
OMIM ID:
147575
; Title: INTERFERON REGULATORY FACTOR 1
Co-localized orphan diseases
NA
Disease related mutation
MutationView:
147575
;
JRE-1.4.0 or later is required.Download JRE at
Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA)
Gene name
Entrez Gene ID:(3659)
Disease
Entrez Gene ID:(3659)
Substance
Entrez Gene ID:(3659)
Related H-InvDB links
DiseaseInfo Viewer
;
LEGENDA
;
Evolutionary information
Last modified:27-May-2015
Relationship
Species
Accession number
MGI
Links
Orthology
Mus sp.
(Mouse)
AK157347
G-integra
Orthology
Bos sp.
(Cow)
BC102766
G-integra
Orthology
Gallus sp.
(Chicken)
ENSGALT00000002244
G-integra
Orthology
Macaca sp.
(Macaque)
ENSMMUT00000011322
G-integra
Orthology
Pongo sp.
(Orangutan)
ENSPPYT00000018338
G-integra
Orthology
Pan sp.
(Chimpanzee)
ENSPTRT00000031881
G-integra
Orthology
Tetraodon sp.
(Tetraodon)
GSTENT00037577001
G-integra
Orthology
Rattus sp.
(Rat)
M34253
G-integra
Orthology
Takifugu sp.
(Fugu)
SINFRUT00000130702
G-integra
Orthology
Monodelphis sp.
(Opossum)
XM_001371779
G-integra
Orthology
Equus sp.
(Horse)
XM_001504445
G-integra
Orthology
Canis sp.
(Dog)
XM_538621
G-integra
Phylogenetic tree [View by
ATV]
Neighbor-joining (phb)
Related H-InvDB links
Evola
;
d
N
/
d
S
(under constraction);
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
22 .. 22
G/C
rs11242115
+
5'UTR
113 .. 113
T/C
rs10900809
+
5'UTR
125 .. 125
C/T
rs960757
+
5'UTR
128 .. 128
C/T
rs111285485
-
5'UTR
172 .. 172
G/A
rs17848393
+
5'UTR
225 .. 225
A/T
rs121912469
+
CDS
Nonsynonymous[Met8Leu]
233 .. 233
C/G
rs201470560
-
CDS
Synonymous[Pro10Pro]
234 .. 234
T/C
rs121912470
+
CDS
Nonsynonymous[Trp11Arg]
259 .. 259
A/G
rs200434461
-
CDS
Nonsynonymous[Asn19Ser]
305 .. 305
C/T
rs117282832
-
CDS
Synonymous[Phe34Phe]
402 .. 402
G/C
rs137993322
-
CDS
Nonsynonymous[Ala67Pro]
476 .. 476
C/T
rs199589588
-
CDS
Synonymous[Ile91Ile]
522 .. 522
C/T
rs146963938
-
CDS
AA-STOP[Arg107*]
527 .. 527
G/A
rs149276593
-
CDS
Synonymous[Val108Val]
548 .. 548
C/G
rs17622685
-
CDS
Synonymous[Leu115Leu]
605 .. 605
G/A
rs200378665
-
CDS
Synonymous[Lys134Lys]
656 .. 656
A/T
rs185307675
-
CDS
Synonymous[Gly151Gly]
695 .. 695
C/T
rs138606864
-
CDS
Synonymous[Tyr164Tyr]
710 .. 710
C/T
rs201815197
-
CDS
Synonymous[Tyr169Tyr]
727 .. 727
T/C
rs150089120
-
CDS
Nonsynonymous[Val175Ala]
758 .. 758
A/G
rs9282762
+
CDS
Synonymous[Pro185Pro]
782 .. 782
C/T
rs17848410
+
CDS
Synonymous[Pro193Pro]
811 .. 811
C/T
rs146891501
-
CDS
Nonsynonymous[Pro203Leu]
862 .. 862
C/T
rs145101897
-
CDS
Nonsynonymous[Thr220Ile]
875 .. 875
A/C
rs141364775
-
CDS
Synonymous[Thr224Thr]
935 .. 935
G/A
rs201186445
-
CDS
Synonymous[Ser244Ser]
954 .. 954
G/A
rs201857248
-
CDS
Nonsynonymous[Val251Met]
968 .. 968
G/A
rs199626190
-
CDS
Synonymous[Gly255Gly]
979 .. 979
A/G
rs200736826
-
CDS
Nonsynonymous[Asn259Ser]
1019 .. 1019
T/C
rs146613421
-
CDS
Synonymous[Phe272Phe]
1055 .. 1055
G/C
rs113976540
-
CDS
Synonymous[Gly284Gly]
1133 .. 1133
G/A
rs142853835
-
CDS
Synonymous[Leu310Leu]
1146 .. 1146
T/C
rs55746618
-
CDS
Synonymous[Leu315Leu]
1218 .. 1218
C/G
rs56288038
-
3'UTR
1323 .. 1323
C/T
rs17848427
+
3'UTR
1332 .. 1332
T/C
rs190321767
-
3'UTR
1562 .. 1562
C/T
rs17848428
+
3'UTR
1609 .. 1609
G/A
rs34850771
+
3'UTR
1625 .. 1625
C/A/T
rs17848429
+
3'UTR
1627 .. 1627
C/G
rs35642338
+
3'UTR
1690 .. 1690
T/C
rs17848431
+
3'UTR
1693 .. 1693
G/A
rs35178118
+
3'UTR
1698 .. 1698
G/A
rs839
+
3'UTR
1834 .. 1834
C/A
rs17848433
+
3'UTR
1876 .. 1876
C/T
rs17848434
+
3'UTR
1922 .. 1922
G/C
rs145347120
-
3'UTR
2009 .. 2009
A/G
rs115945411
-
3'UTR
2019 .. 2019
G/T
rs139911206
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;