H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000035823 Accession number: BC012455 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Vesicle transport protein GOT1B; Germ cell tumor 2; Golgi transport 1 homolog B; Putative NF-kappa-B-activating protein 470; hGOT1a;
 
 

Transcript original information
Accession number BC012455.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:8734 IMAGE:3864238
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (GOLT1B) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (GOLT1B);
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 1004[bp] (No. of exon:5)[A:294 T:330 G:202 C:178]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Ovary, adenocarcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 992(+) Signal: 972-976(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0010479
Genomic location  G-integra Help Chromosome 12
Location 12p12.1
Position 21654778- 21669136
Strand +
Possible duplicated location(s) NA
Gene structure 5 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51026
KEGG GENES KEGG GENES(51026)
GeneCard GeneCardGOLT1B*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000065538
Predicted CDS 81..497;  138[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.657
Database links RefSeq NP_057156
UniProt Q2YDE3Q9Y3E0
CCDS CCDS8689

Motif information
ORF

length(138),orf(81:497)
MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVI
GLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRG
FFPVVVGFIRRVPVLGSLLNLPGIRSFVDKVGESNNMV*
a.a.
length
InterPro Name
length(118), motif(9:126) 118 IPR007305 Vesicle transport protein, Got1/SFT2-like [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000035823
H-Inv cluster ID Locus viewHIX0010479
Accession number BC012455.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Vesicle transport protein GOT1B; Germ cell tumor 2; Golgi transport 1 homolog B; Putative NF-kappa-B-activating protein 470; hGOT1a;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9Y3E0)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1040679810810093112301661241465012761501129753091470203915489334ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol GOLT1B
HGNC aliases "golgi transport 1 homolog B (S. cerevisiae)"
HGNC name golgi transport 1B
DDBJ GOLT1B
UniProt GOLT1B
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000065538
No. of interaction 2
Interaction partner(s) HIP000049721HIP000161729
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51026
KEGG GENES KEGG GENES(51026)
GeneCard GeneCardGOLT1B*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Biological process vesicle-mediated transport (GO:0016192); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT plasma membrane;  lysosome;  endoplasmic; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA170922; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 218193_s_at; 
HG-U133A 218193_s_at; 
HG-U133A_2 218193_s_at; 
HG-U133B NA
HG-U133_Plus_2 218193_s_at; 
HG-U95 48368_at;  56591_at; 
HG-U95A NA
HG-U95B 48368_at; 
HG-U95C 56591_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3407825;  3407826;  3407828;  3407834;  3407838;  3407843;  3407844;  3407845;  3446836; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P162425; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P162425; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
48 .. 48 G/C rs71539408 + 5'UTR
54 .. 54 T/G rs1060126 + 5'UTR
84 .. 84 A/T rs147207926 + CDS Nonsynonymous[Ile2Phe]
119 .. 119 A/T rs202054086 + CDS Synonymous[Gly13Gly]
135 .. 135 G/A rs199777124 + CDS Nonsynonymous[Val19Met]
175 .. 175 A/G rs201492982 + CDS Nonsynonymous[Lys32Arg]
176 .. 176 A/G rs140521461 + CDS Synonymous[Lys32Lys]
179 .. 179 A/G rs182356642 + CDS Synonymous[Ala33Ala]
198 .. 198 G/A rs200318646 + CDS Nonsynonymous[Val40Ile]
392 .. 392 C/T rs144443367 + CDS Synonymous[Val104Val]
393 .. 393 G/A rs34378602 + CDS Nonsynonymous[Val105Ile]
395 .. 395 T/C rs148439968 + CDS Synonymous[Val105Val]
434 .. 434 C/T rs199629012 + CDS Synonymous[Leu118Leu]
457 .. 457 C/T rs74067037 + CDS Nonsynonymous[Ser126Leu]
527 .. 527 A/G rs143119971 + 3'UTR
535 .. 535 T/A rs151188178 + 3'UTR
567 .. 567 A/G rs140311570 + 3'UTR
612 .. 612 G/C rs150365349 + 3'UTR
623 .. 623 A/G rs138204721 + 3'UTR
656 .. 656 A/G rs113101644 + 3'UTR
770 .. 770 G/T rs116507571 + 3'UTR
788 .. 788 G/A rs181837509 + 3'UTR
825 .. 825 T/- rs71444128 + 3'UTR
883 .. 883 G/A rs1366 - 3'UTR
896 .. 896 T/G rs184561186 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer