H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000037997 Accession number: BC017415 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Dynein heavy chain 14, axonemal isoform 3.
 
 

Transcript original information
Accession number BC017415.2
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:4655328
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 953[bp] (No. of exon:6)[A:373 T:268 G:174 C:138]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Lung, mucoepidermoid carcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 927(+) Signal: 902-906(+)
Vector/adapter sequence NA
Frame shift 238-238[bp] Insertion(T);
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0023859
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 225140372- 225155621
Strand +
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:127602
KEGG GENES KEGG GENES(127602)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000051025
Predicted CDS 34..720;  228[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.686
Database links RefSeq NP_659426
UniProt NA
CCDS CCDS41472

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000037997
H-Inv cluster ID Locus viewHIX0023859
Accession number BC017415.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Dynein heavy chain 14, axonemal isoform 3.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_659426)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000051025
No. of interaction 1
Interaction partner(s) HIP000103557
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:127602
KEGG GENES KEGG GENES(127602)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  peroxisome;  Other; 
Target P Other
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
1 128 1i3qA 6e-04 22.0 118/100 e.29.1.2
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 242283_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 242283_at; 
HG-U133_Plus_2 242283_at; 
HG-U95 49926_at;  70921_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 49926_at; 
HG-U95D NA
HG-U95E 70921_at; 
HG-U95Av2 NA
HuEx-1_0 2382627;  2382628;  2382629;  2382632;  2382633;  2382634;  2382637;  2382638;  2382639;  2382640; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_23_P333951; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
42 .. 42 G/A rs192193099 + CDS Synonymous[Thr3Thr]
88 .. 88 G/T rs61745064 + CDS AA-STOP[Glu19*]
100 .. 100 A/G rs201634729 + CDS Nonsynonymous[Thr23Ala]
160 .. 160 A/T rs41267347 + CDS Nonsynonymous[Thr43Ser]
328 .. 328 A/G rs201089763 + CDS Nonsynonymous[Arg99Gly]
374 .. 374 C/T rs199833408 + CDS Nonsynonymous[Ala114Val]
389 .. 389 A/G rs202149727 + CDS Nonsynonymous[Tyr119Cys]
442 .. 442 C/T rs192345324 + CDS AA-STOP[Arg137*]
473 .. 473 C/T rs41267349 + CDS Nonsynonymous[Pro147Leu]
493 .. 493 G/A rs202121833 + CDS Nonsynonymous[Gly154Arg]
509 .. 509 C/T rs200184686 + CDS Nonsynonymous[Ala159Val]
518 .. 518 A/T rs79645812 + CDS Nonsynonymous[Lys162Met]
575 .. 575 G/A rs201807754 + CDS Nonsynonymous[Arg181Gln]
624 .. 624 G/A rs61732752 + CDS Synonymous[Ser197Ser]
643 .. 643 T/A rs199814205 + CDS Nonsynonymous[Cys204Ser]
727 .. 727 C/T rs190977826 + 3'UTR
798 .. 798 T/C rs183978159 + 3'UTR
914 .. 914 A/T rs74149425 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer