H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000039534 Accession number: BC022432 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Small nuclear ribonucleoprotein G; snRNP-G; Sm protein G; Sm-G; SmG;
 
 

Transcript original information
Accession number BC022432.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:24706 IMAGE:4276853
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 606[bp] (No. of exon:4)[A:208 T:170 G:131 C:97]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Brain, primitive neuroectodermal
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 578(+) Signal: 568-572(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002138
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 70508507- 70520869
Strand -
Possible duplicated location(s) NA
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6637
KEGG GENES KEGG GENES(6637)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000099206
Predicted CDS 89..319;  76[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.664
Database links RefSeq NP_003087
UniProt P62308P62309Q3ZBL0
CCDS CCDS1903

Motif information
ORF

length(76),orf(89:319)
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAT
SGQQNNIGMVVIRGNSIIMLEALERV*
a.a.
length
InterPro Name
length(68), motif(7:74) 68 IPR010920 Like-Sm (LSM) domain [Domain]
length(66), motif(7:72) 66 IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type [Domain]
length(63), motif(8:70) 63 IPR001163 Ribonucleoprotein LSM domain [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000039534
H-Inv cluster ID Locus viewHIX0002138
Accession number BC022432.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Small nuclear ribonucleoprotein G; snRNP-G; Sm protein G; Sm-G; SmG;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62308)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 7744013115744791199163812165861151460771548933415815621ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ SNRPG
UniProt SNRPG
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000099206
No. of interaction 4
Interaction partner(s) HIP000029955HIP000052884HIP000096090HIP000357563
BIND 185297;  185517;  185518;  300563; 
DIP 102913E;  113036E;  113932E;  144709E;  175696E; 
MINT MINT-13668;  MINT-13669;  MINT-49756;  MINT-49757;  MINT-49761;  MINT-5205368; 
HPRD 00548;  01655;  02557;  02877;  03039;  03144;  03560;  03694;  03913;  04645;  05127;  05201;  05496;  05859;  06110;  06295;  07341;  07601;  09663;  10391;  16246;  16735;  17212; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6637
KEGG GENES KEGG GENES(6637)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  extracellular;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
9 74 1d3bA 1e-16 21.2 66/72 b.38.1.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA010407;  AGhsA011010; 
Affymetrix
GeneChip
HG-Focus 205644_s_at; 
HG-U133 205644_s_at; 
HG-U133A 205644_s_at; 
HG-U133A_2 205644_s_at; 
HG-U133B NA
HG-U133_Plus_2 205644_s_at; 
HG-U95 37337_at; 
HG-U95A 37337_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2376438;  2376439;  2376440;  2452462;  2558579;  2558580;  2558581;  2558585;  2558586;  2558592;  2558593;  3278125;  3563446;  3808679;  3808680;  3808681;  3822796;  3822797; 
HuGeneFL X85373_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P102231; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P102235; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) BC051470 MGI:1915261 G-integraG-integra
Orthology Danio sp. (Zebrafish) BC081512 G-integraG-integra
Orthology Bos sp. (Cow) BC103236 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) CR668103 G-integraG-integra
Orthology Equus sp. (Horse) ENSECAT00000021284 G-integraG-integra
Orthology Monodelphis sp. (Opossum) ENSMODT00000014683 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000002670 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000014304 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000154208 G-integraG-integra
Orthology Rattus sp. (Rat) XM_001058230 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001099200 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XM_001142515 G-integraG-integra
Orthology Gallus sp. (Chicken) XM_001233286 G-integraG-integra
Orthology Canis sp. (Dog) XM_850384 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
19 .. 19 C/G rs75215614 - 5'UTR
22 .. 22 C/A rs185436321 - 5'UTR
24 .. 24 G/T/C/A rs15656 - 5'UTR
43 .. 43 C/G rs191710102 - 5'UTR
77 ^ 78 -/G rs34968038 - 5'UTR
222 .. 222 G/A rs111451431 - CDS Nonsynonymous[Cys45Tyr]
332 .. 332 C/A rs111510626 - 3'UTR
456 .. 456 C/T rs1050242 + 3'UTR
496 .. 496 T/C rs14631 - 3'UTR
502 .. 502 C/T rs1131031 + 3'UTR
526 .. 526 A/G rs2272530 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer