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H-Invitational ID: HIT000041740 Accession number: BC032940 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Lysosome-associated membrane glycoprotein 3; LAMP-3; Lysosomal-associated membrane protein 3; DC-lysosome-associated membrane glycoprotein; DC LAMP; Protein TSC403; AltName: CD_antigen=CD208; Precursor;
 
 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
129 .. 129 G/T rs11543123 - 5'UTR
144 .. 144 T/C rs3811729 - 5'UTR
275 .. 275 G/A rs17853113 - CDS Nonsynonymous[Gly32Glu]
320 .. 320 A/T rs34762350 + CDS Nonsynonymous[Asp47Val]
332 .. 332 C/A rs139429240 - CDS Nonsynonymous[Pro51His]
341 .. 341 A/C rs116484646 - CDS Nonsynonymous[Gln54Pro]
347 .. 347 C/T rs34589722 - CDS Nonsynonymous[Ala56Val]
384 .. 384 C/T rs142441403 - CDS Synonymous[Phe68Phe]
397 .. 397 A/G rs139469419 - CDS Nonsynonymous[Ile73Val]
413 .. 413 C/T rs114675283 - CDS Nonsynonymous[Ala78Val]
445 .. 445 G/A rs138277927 - CDS Nonsynonymous[Ala89Thr]
447 .. 447 A/G rs653316 + CDS Synonymous[Ala89Ala]
451 .. 451 A/G rs138719911 - CDS Nonsynonymous[Thr91Ala]
490 .. 490 C/A rs144079250 - CDS Nonsynonymous[Leu104Met]
497 .. 497 C/T rs114774430 - CDS Nonsynonymous[Thr106Ile]
529 .. 529 G/C rs147017210 - CDS Nonsynonymous[Ala117Pro]
556 .. 556 G/A rs115430414 - CDS Nonsynonymous[Gly126Ser]
584 .. 584 C/T rs115061463 - CDS Nonsynonymous[Pro135Leu]
591 .. 591 C/T rs149505650 - CDS Synonymous[Thr137Thr]
609 .. 609 T/C rs138019945 - CDS Synonymous[His143His]
633 .. 633 C/T rs114545672 - CDS Synonymous[Thr151Thr]
634 .. 634 G/A rs150380664 - CDS Nonsynonymous[Val152Ile]
698 .. 698 C/T rs115806403 - CDS Nonsynonymous[Ser173Leu]
708 .. 708 G/A rs189233925 - CDS Synonymous[Leu176Leu]
733 .. 733 C/A rs200432110 - CDS Nonsynonymous[Pro185Thr]
742 .. 742 C/T rs114567398 - CDS Nonsynonymous[Pro188Ser]
765 .. 765 G/A rs150142221 - CDS Synonymous[Thr195Thr]
784 .. 784 A/C rs74952055 - CDS Nonsynonymous[Thr202Pro]
798 .. 798 A/C rs201353315 - CDS Synonymous[Ala206Ala]
804 .. 804 C/A rs144987542 - CDS Synonymous[Ala208Ala]
820 .. 820 C/A rs141320216 - CDS Nonsynonymous[Pro214Thr]
825 .. 825 C/A rs202015231 - CDS Synonymous[Thr215Thr]
836 .. 836 A/G rs111542625 - CDS Nonsynonymous[Gln219Arg]
839 .. 839 C/T rs116799073 - CDS Nonsynonymous[Pro220Leu]
876 .. 876 C/T rs140803277 - CDS Synonymous[Asn232Asn]
880 .. 880 A/G rs202029050 - CDS Nonsynonymous[Ser234Gly]
927 .. 927 A/G rs112754078 - CDS Synonymous[Gln249Gln]
940 .. 940 G/T rs34096850 + CDS Nonsynonymous[Val254Phe]
978 .. 978 C/T rs116672488 - CDS Synonymous[Asn266Asn]
983 .. 983 C/T rs151059567 - CDS Nonsynonymous[Thr268Met]
984 .. 984 G/A rs115202841 - CDS Synonymous[Thr268Thr]
988 .. 988 G/A rs115281513 - CDS Nonsynonymous[Ala270Thr]
994 .. 994 G/A rs148986218 - CDS Nonsynonymous[Gly272Arg]
1020 .. 1020 C/A rs145794465 - CDS Nonsynonymous[Asn280Lys]
1025 .. 1025 T/C rs149853534 - CDS Nonsynonymous[Leu282Pro]
1028 .. 1028 T/G rs140974816 - CDS Nonsynonymous[Leu283Trp]
1040 .. 1040 G/A rs147364489 - CDS Nonsynonymous[Gly287Asp]
1042 .. 1042 G/T rs144190741 - CDS AA-STOP[Gly288*]
1088 .. 1088 T/C rs140435160 - CDS Nonsynonymous[Ile303Thr]
1103 .. 1103 C/A rs150542201 - CDS Nonsynonymous[Ala308Asp]
1113 .. 1113 C/T rs141665019 - CDS Synonymous[Thr311Thr]
1124 .. 1124 C/T rs148458065 - CDS Nonsynonymous[Pro315Leu]
1132 .. 1132 G/A rs482912 + CDS Nonsynonymous[Val318Ile]
1141 .. 1141 G/A rs200866582 - CDS Nonsynonymous[Gly321Arg]
1148 .. 1148 A/C rs34675146 + CDS Nonsynonymous[Lys323Thr]
1153 .. 1153 G/A rs138755163 - CDS Nonsynonymous[Ala325Thr]
1154 .. 1154 C/T rs145020803 - CDS Nonsynonymous[Ala325Val]
1155 .. 1155 G/A rs142742559 - CDS Synonymous[Ala325Ala]
1167 .. 1167 C/G rs201805861 - CDS Nonsynonymous[Phe329Leu]
1179 .. 1179 C/T rs113968313 - CDS Synonymous[Val333Val]
1180 .. 1180 G/A rs150432783 - CDS Nonsynonymous[Gly334Arg]
1181 .. 1181 G/A rs140475701 - CDS Nonsynonymous[Gly334Glu]
1197 .. 1197 C/T rs189726815 - CDS Synonymous[Cys339Cys]
1226 .. 1226 C/T rs116638515 - CDS Nonsynonymous[Ala349Val]
1248 .. 1248 C/T rs35597162 + CDS Synonymous[Thr356Thr]
1310 .. 1310 C/T rs187909317 - CDS Nonsynonymous[Ser377Leu]
1311 .. 1311 G/A rs146757863 - CDS Synonymous[Ser377Ser]
1371 .. 1371 G/T rs113287351 - CDS Nonsynonymous[Met397Ile]
1399 .. 1399 A/C rs182955501 - CDS Synonymous[Arg407Arg]
1440 .. 1440 C/T rs75363270 - 3'UTR
1491 .. 1491 A/G rs59541519 - 3'UTR
1572 .. 1572 T/G rs146384926 - 3'UTR
1706 .. 1706 T/A rs77148492 - 3'UTR
1816 .. 1816 T/A rs190764289 - 3'UTR
1846 .. 1846 T/C rs56682988 - 3'UTR
1867 .. 1867 A/G rs112969763 - 3'UTR
1967 .. 1967 C/T rs57212846 - 3'UTR
2055 .. 2055 C/T rs138948407 - 3'UTR
2134 .. 2134 C/A rs113573186 - 3'UTR
2228 .. 2228 G/A rs202182791 - 3'UTR
2363 .. 2363 C/T rs16833703 - 3'UTR
2507 .. 2507 G/A rs78824130 - 3'UTR
2585 .. 2585 T/C rs2314418 - 3'UTR
2626 .. 2626 C/T rs149587685 - 3'UTR
2686 .. 2686 A/G rs138173696 - 3'UTR
2835 .. 2835 A/T rs150404873 - 3'UTR
2872 .. 2872 G/T rs11720788 - 3'UTR
2977 .. 2977 C/T rs141496275 - 3'UTR
3051 .. 3051 G/T rs183246801 - 3'UTR
3077 .. 3077 T/G rs73886231 - 3'UTR
3147 .. 3147 T/G rs2314417 - 3'UTR
3150 .. 3150 G/A rs2314416 - 3'UTR
3279 .. 3279 T/C rs12353 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Mini-G

 Repeat  Repeat mask viewer
Type Start End Strand
AluSq2 1937 2235 -
MIRb 2449 2641 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer