H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID:
HIT000041740
Accession number:
BC032940
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Lysosome-associated membrane glycoprotein 3; LAMP-3; Lysosomal-associated membrane protein 3; DC-lysosome-associated membrane glycoprotein; DC LAMP; Protein TSC403; AltName: CD_antigen=CD208; Precursor;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
129 .. 129
G/T
rs11543123
-
5'UTR
144 .. 144
T/C
rs3811729
-
5'UTR
275 .. 275
G/A
rs17853113
-
CDS
Nonsynonymous[Gly32Glu]
320 .. 320
A/T
rs34762350
+
CDS
Nonsynonymous[Asp47Val]
332 .. 332
C/A
rs139429240
-
CDS
Nonsynonymous[Pro51His]
341 .. 341
A/C
rs116484646
-
CDS
Nonsynonymous[Gln54Pro]
347 .. 347
C/T
rs34589722
-
CDS
Nonsynonymous[Ala56Val]
384 .. 384
C/T
rs142441403
-
CDS
Synonymous[Phe68Phe]
397 .. 397
A/G
rs139469419
-
CDS
Nonsynonymous[Ile73Val]
413 .. 413
C/T
rs114675283
-
CDS
Nonsynonymous[Ala78Val]
445 .. 445
G/A
rs138277927
-
CDS
Nonsynonymous[Ala89Thr]
447 .. 447
A/G
rs653316
+
CDS
Synonymous[Ala89Ala]
451 .. 451
A/G
rs138719911
-
CDS
Nonsynonymous[Thr91Ala]
490 .. 490
C/A
rs144079250
-
CDS
Nonsynonymous[Leu104Met]
497 .. 497
C/T
rs114774430
-
CDS
Nonsynonymous[Thr106Ile]
529 .. 529
G/C
rs147017210
-
CDS
Nonsynonymous[Ala117Pro]
556 .. 556
G/A
rs115430414
-
CDS
Nonsynonymous[Gly126Ser]
584 .. 584
C/T
rs115061463
-
CDS
Nonsynonymous[Pro135Leu]
591 .. 591
C/T
rs149505650
-
CDS
Synonymous[Thr137Thr]
609 .. 609
T/C
rs138019945
-
CDS
Synonymous[His143His]
633 .. 633
C/T
rs114545672
-
CDS
Synonymous[Thr151Thr]
634 .. 634
G/A
rs150380664
-
CDS
Nonsynonymous[Val152Ile]
698 .. 698
C/T
rs115806403
-
CDS
Nonsynonymous[Ser173Leu]
708 .. 708
G/A
rs189233925
-
CDS
Synonymous[Leu176Leu]
733 .. 733
C/A
rs200432110
-
CDS
Nonsynonymous[Pro185Thr]
742 .. 742
C/T
rs114567398
-
CDS
Nonsynonymous[Pro188Ser]
765 .. 765
G/A
rs150142221
-
CDS
Synonymous[Thr195Thr]
784 .. 784
A/C
rs74952055
-
CDS
Nonsynonymous[Thr202Pro]
798 .. 798
A/C
rs201353315
-
CDS
Synonymous[Ala206Ala]
804 .. 804
C/A
rs144987542
-
CDS
Synonymous[Ala208Ala]
820 .. 820
C/A
rs141320216
-
CDS
Nonsynonymous[Pro214Thr]
825 .. 825
C/A
rs202015231
-
CDS
Synonymous[Thr215Thr]
836 .. 836
A/G
rs111542625
-
CDS
Nonsynonymous[Gln219Arg]
839 .. 839
C/T
rs116799073
-
CDS
Nonsynonymous[Pro220Leu]
876 .. 876
C/T
rs140803277
-
CDS
Synonymous[Asn232Asn]
880 .. 880
A/G
rs202029050
-
CDS
Nonsynonymous[Ser234Gly]
927 .. 927
A/G
rs112754078
-
CDS
Synonymous[Gln249Gln]
940 .. 940
G/T
rs34096850
+
CDS
Nonsynonymous[Val254Phe]
978 .. 978
C/T
rs116672488
-
CDS
Synonymous[Asn266Asn]
983 .. 983
C/T
rs151059567
-
CDS
Nonsynonymous[Thr268Met]
984 .. 984
G/A
rs115202841
-
CDS
Synonymous[Thr268Thr]
988 .. 988
G/A
rs115281513
-
CDS
Nonsynonymous[Ala270Thr]
994 .. 994
G/A
rs148986218
-
CDS
Nonsynonymous[Gly272Arg]
1020 .. 1020
C/A
rs145794465
-
CDS
Nonsynonymous[Asn280Lys]
1025 .. 1025
T/C
rs149853534
-
CDS
Nonsynonymous[Leu282Pro]
1028 .. 1028
T/G
rs140974816
-
CDS
Nonsynonymous[Leu283Trp]
1040 .. 1040
G/A
rs147364489
-
CDS
Nonsynonymous[Gly287Asp]
1042 .. 1042
G/T
rs144190741
-
CDS
AA-STOP[Gly288*]
1088 .. 1088
T/C
rs140435160
-
CDS
Nonsynonymous[Ile303Thr]
1103 .. 1103
C/A
rs150542201
-
CDS
Nonsynonymous[Ala308Asp]
1113 .. 1113
C/T
rs141665019
-
CDS
Synonymous[Thr311Thr]
1124 .. 1124
C/T
rs148458065
-
CDS
Nonsynonymous[Pro315Leu]
1132 .. 1132
G/A
rs482912
+
CDS
Nonsynonymous[Val318Ile]
1141 .. 1141
G/A
rs200866582
-
CDS
Nonsynonymous[Gly321Arg]
1148 .. 1148
A/C
rs34675146
+
CDS
Nonsynonymous[Lys323Thr]
1153 .. 1153
G/A
rs138755163
-
CDS
Nonsynonymous[Ala325Thr]
1154 .. 1154
C/T
rs145020803
-
CDS
Nonsynonymous[Ala325Val]
1155 .. 1155
G/A
rs142742559
-
CDS
Synonymous[Ala325Ala]
1167 .. 1167
C/G
rs201805861
-
CDS
Nonsynonymous[Phe329Leu]
1179 .. 1179
C/T
rs113968313
-
CDS
Synonymous[Val333Val]
1180 .. 1180
G/A
rs150432783
-
CDS
Nonsynonymous[Gly334Arg]
1181 .. 1181
G/A
rs140475701
-
CDS
Nonsynonymous[Gly334Glu]
1197 .. 1197
C/T
rs189726815
-
CDS
Synonymous[Cys339Cys]
1226 .. 1226
C/T
rs116638515
-
CDS
Nonsynonymous[Ala349Val]
1248 .. 1248
C/T
rs35597162
+
CDS
Synonymous[Thr356Thr]
1310 .. 1310
C/T
rs187909317
-
CDS
Nonsynonymous[Ser377Leu]
1311 .. 1311
G/A
rs146757863
-
CDS
Synonymous[Ser377Ser]
1371 .. 1371
G/T
rs113287351
-
CDS
Nonsynonymous[Met397Ile]
1399 .. 1399
A/C
rs182955501
-
CDS
Synonymous[Arg407Arg]
1440 .. 1440
C/T
rs75363270
-
3'UTR
1491 .. 1491
A/G
rs59541519
-
3'UTR
1572 .. 1572
T/G
rs146384926
-
3'UTR
1706 .. 1706
T/A
rs77148492
-
3'UTR
1816 .. 1816
T/A
rs190764289
-
3'UTR
1846 .. 1846
T/C
rs56682988
-
3'UTR
1867 .. 1867
A/G
rs112969763
-
3'UTR
1967 .. 1967
C/T
rs57212846
-
3'UTR
2055 .. 2055
C/T
rs138948407
-
3'UTR
2134 .. 2134
C/A
rs113573186
-
3'UTR
2228 .. 2228
G/A
rs202182791
-
3'UTR
2363 .. 2363
C/T
rs16833703
-
3'UTR
2507 .. 2507
G/A
rs78824130
-
3'UTR
2585 .. 2585
T/C
rs2314418
-
3'UTR
2626 .. 2626
C/T
rs149587685
-
3'UTR
2686 .. 2686
A/G
rs138173696
-
3'UTR
2835 .. 2835
A/T
rs150404873
-
3'UTR
2872 .. 2872
G/T
rs11720788
-
3'UTR
2977 .. 2977
C/T
rs141496275
-
3'UTR
3051 .. 3051
G/T
rs183246801
-
3'UTR
3077 .. 3077
T/G
rs73886231
-
3'UTR
3147 .. 3147
T/G
rs2314417
-
3'UTR
3150 .. 3150
G/A
rs2314416
-
3'UTR
3279 .. 3279
T/C
rs12353
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
AluSq2
1937
2235
-
MIRb
2449
2641
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;