H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000043308 Accession number: AK123435 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK123435.1
CAGE tag ID NA
EST ID NA
Clone Number BRHIP3000475
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ABL2) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ABL2);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 4095[bp] (No. of exon:2)[A:1150 T:1333 G:836 C:776]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type hippocampus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted;  Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001374
Genomic location  G-integra Help Chromosome 1
Location 1q25.2
Position 179070798- 179074885
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardABL2*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000155683
Predicted CDS 349..549;  66[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.642

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000043308
H-Inv cluster ID Locus viewHIX0001374
Accession number AK123435.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ABL2
HGNC aliases "v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)", "v-abl Abelson murine leukemia viral oncogene homolog 2", "c-abl oncogene 2, non-receptor tyrosine kinase"
HGNC name ABL proto-oncogene 2, non-receptor tyrosine kinase
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000155683
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardABL2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL liver; 
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 231907_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 231907_at; 
HG-U133_Plus_2 231907_at; 
HG-U95 62243_i_at;  62244_r_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 62243_i_at;  62244_r_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2369526;  2369527;  2446052; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name:NA
Related information in OMIM OMIM ID:  164690;  Title: V-ABL ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2
Co-localized orphan diseases NA
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
17 .. 17 A/C rs10913692 - 5'UTR
90 .. 90 G/A rs12072619 - 5'UTR
115 .. 115 G/A rs9729162 - 5'UTR
252 .. 252 C/G rs187620401 - 5'UTR
287 .. 287 T/G rs117228532 - 5'UTR
289 .. 289 G/A rs182661903 - 5'UTR
443 .. 443 A/G rs192040668 - CDS Nonsynonymous[Gln32Arg]
499 .. 499 A/G rs186529872 - CDS Nonsynonymous[Ser51Gly]
550 .. 550 G/T rs181888848 - 3'UTR
612 .. 612 G/A rs143526239 - 3'UTR
626 .. 626 A/G rs74131925 - 3'UTR
627 .. 627 T/C rs141773318 - 3'UTR
852 .. 852 A/G rs190799944 - 3'UTR
957 .. 957 T/C rs112527833 - 3'UTR
1087 .. 1087 A/G rs12759699 - 3'UTR
1244 .. 1244 A/T rs144659800 - 3'UTR
1246 .. 1246 A/G rs140936167 - 3'UTR
1520 .. 1520 T/A rs116048422 - 3'UTR
1559 .. 1559 A/G rs144886763 - 3'UTR
1654 .. 1654 C/A rs60121043 - 3'UTR
1690 .. 1690 A/G rs12569049 - 3'UTR
1775 .. 1775 T/C rs186082548 - 3'UTR
1800 .. 1800 T/C rs150299178 - 3'UTR
1811 .. 1811 G/A rs16853672 - 3'UTR
1847 .. 1847 G/C rs4651014 - 3'UTR
1902 .. 1902 G/T rs151121632 - 3'UTR
1920 .. 1920 G/A rs4651013 - 3'UTR
1971 .. 1971 C/T rs181292776 - 3'UTR
2011 .. 2011 G/A rs189692933 - 3'UTR
2158 .. 2158 A/G rs3829794 - 3'UTR
2262 .. 2262 C/T rs75390485 - 3'UTR
2405 .. 2405 A/C rs141734152 - 3'UTR
2406 .. 2406 A/T rs184431230 - 3'UTR
2567 .. 2567 G/T rs181004855 - 3'UTR
2591 .. 2591 G/A rs78206228 - 3'UTR
2613 .. 2613 G/A rs188091596 - 3'UTR
2628 .. 2628 C/T rs144717721 - 3'UTR
2672 .. 2672 C/A rs116676084 - 3'UTR
2765 .. 2765 T/A rs148754852 - 3'UTR
2774 .. 2774 C/T rs144208966 - 3'UTR
2812 .. 2812 G/A rs184844560 - 3'UTR
2955 .. 2955 A/T rs192470920 - 3'UTR
2968 .. 2968 C/A rs1325194 + 3'UTR
3017 .. 3017 G/C rs187364738 - 3'UTR
3021 .. 3021 C/T rs4651012 - 3'UTR
3094 .. 3094 G/C rs115727481 - 3'UTR
3103 .. 3103 A/G rs149984339 - 3'UTR
3130 .. 3130 C/T rs1325195 + 3'UTR
3156 .. 3156 C/T rs184192725 - 3'UTR
3171 .. 3171 A/G rs192732952 - 3'UTR
3332 .. 3332 G/A rs139185338 - 3'UTR
3502 .. 3502 T/C rs199965966 - 3'UTR
3570 .. 3570 A/T rs74571115 - 3'UTR
3572 .. 3572 T/A rs80017955 - 3'UTR
3661 .. 3661 T/C rs17361990 - 3'UTR
3688 .. 3688 C/T rs182903877 - 3'UTR
3761 .. 3761 C/G rs76656490 - 3'UTR
3783 .. 3783 C/G rs34112331 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 1469 1634 +
MIRc 1848 1987 -
MIRc 2288 2365 +
AluSz6 3358 3551 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer