H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000043853 Accession number: AK123980 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK123980.1
CAGE tag ID NA
EST ID NA
Clone Number SPLEN2015158
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ADCK3) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ADCK3);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2831[bp] (No. of exon:2)[A:679 T:877 G:675 C:600]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type spleen
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001648
Genomic location  G-integra Help Chromosome 1
Location 1q42.13
Position 227084589- 227091365
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardADCK3*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000075606
Predicted CDS 567..947;  126[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.733

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000043853
H-Inv cluster ID Locus viewHIX0001648
Accession number AK123980.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ADCK3
HGNC aliases "chaperone-ABC1 (activity of bc1 complex, S.pombe)-like", "chaperone, ABC1 activity of bc1 complex like (S. pombe)", "chaperone, ABC1 activity of bc1 complex homolog (S. pombe)"
HGNC name aarF domain containing kinase 3
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000075606
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCardADCK3*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol; 
Target P Not predicted
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2383357;  2383358;  2383361;  3471200; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
32 .. 32 G/A rs78018051 + 5'UTR
72 .. 72 G/T rs2802268 + 5'UTR
139 .. 139 C/T rs76292628 + 5'UTR
297 .. 297 C/T rs187573931 + 5'UTR
298 .. 298 G/C rs191135589 + 5'UTR
339 .. 339 A/G rs117694118 + 5'UTR
369 .. 369 G/C rs79706017 + 5'UTR
402 .. 402 G/A rs138389419 + 5'UTR
501 .. 501 T/C rs149253917 + 5'UTR
508 .. 508 C/A rs182222961 + 5'UTR
567 .. 567 A/G rs11802358 + CDS Nonsynonymous[Met1Val]
594 .. 594 G/T rs144430158 + CDS Nonsynonymous[Val10Leu]
720 .. 720 A/G rs187646928 + CDS Nonsynonymous[Ile52Val]
738 .. 738 T/G rs1800671 + CDS Nonsynonymous[Ser58Ala]
791 .. 791 C/T rs192567835 + CDS Synonymous[Pro75Pro]
806 .. 806 A/G rs114893547 + CDS Synonymous[Gln80Gln]
857 .. 857 C/T rs115762664 + CDS Synonymous[His97His]
858 .. 858 G/A rs139814638 + CDS Nonsynonymous[Val98Ile]
874 .. 874 T/C rs1800672 + CDS Nonsynonymous[Leu103Ser]
986 .. 986 G/C rs16846631 + 3'UTR
1023 .. 1023 A/- rs71861771 + 3'UTR
1028 .. 1028 A/G rs185108304 + 3'UTR
1041 .. 1041 G/A rs190356243 + 3'UTR
1058 .. 1058 C/T rs1800673 + 3'UTR
1150 .. 1150 A/G rs71648404 + 3'UTR
1225 .. 1225 A/G rs192701789 + 3'UTR
1236 .. 1236 G/A rs1800674 + 3'UTR
1249 .. 1249 G/T rs184715537 + 3'UTR
1437 .. 1437 G/T rs142359473 + 3'UTR
1513 .. 1513 G/A rs12068726 + 3'UTR
1516 .. 1516 T/C rs116594577 + 3'UTR
1565 .. 1565 T/A rs151283928 + 3'UTR
1607 .. 1607 T/C rs6676065 + 3'UTR
1609 .. 1609 T/A rs6676067 + 3'UTR
1688 .. 1688 T/C rs7530352 + 3'UTR
1748 .. 1748 A/T rs140488664 + 3'UTR
1766 .. 1766 G/A rs188684684 + 3'UTR
1803 .. 1803 T/A rs180759917 + 3'UTR
1812 .. 1812 C/A rs185373506 + 3'UTR
1819 .. 1819 C/T rs189394688 + 3'UTR
1821 .. 1821 G/A rs149996145 + 3'UTR
1839 ^ 1840 -/G rs35074916 + 3'UTR
1883 .. 1883 C/T rs146544825 + 3'UTR
1884 .. 1884 G/A rs181998204 + 3'UTR
1908 .. 1908 G/T rs141434674 + 3'UTR
1949 .. 1949 G/A rs201564908 + 3'UTR
2151 .. 2151 T/C rs145136435 + 3'UTR
2302 .. 2302 G/A rs186736576 + 3'UTR
2315 .. 2315 A/G rs138973233 + 3'UTR
2349 .. 2349 C/T rs2855564 + 3'UTR
2371 .. 2371 A/G rs6426555 + 3'UTR
2498 .. 2498 A/G rs192038467 + 3'UTR
2569 .. 2569 A/G rs183482270 + 3'UTR
2575 .. 2575 C/T rs186320033 + 3'UTR
2655 .. 2655 G/T rs16846644 + 3'UTR
2743 .. 2743 T/A rs74914278 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2 234 391 -
L1ME3Cz 737 918 -
L1ME3Cz 945 1067 -
AluSq2 1068 1367 -
L1ME3Cz 1368 1487 -
L1ME3Cz 1531 1738 -
AluY 1739 2026 -
L1ME3Cz 2027 2542 -
MER92B 2695 2822 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer