H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000045563 Accession number: AK125690 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK125690.1
CAGE tag ID NA
EST ID NA
Clone Number TESOP2001122
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (LIN9) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (LIN9);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2358[bp] (No. of exon:9)[A:812 T:755 G:411 C:380]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type esophageal, tumor tissue
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 2336(+) Signal: 2320-2324(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0023586
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226418864- 226465526
Strand -
Possible duplicated location(s) NA
Gene structure 9 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:286826
KEGG GENES KEGG GENES(286826)
GeneCard GeneCardLIN9*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000440996
Predicted CDS 1312..1443;  43[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.684

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000045563
H-Inv cluster ID Locus viewHIX0023586
Accession number AK125690.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol LIN9
HGNC aliases "lin-9 homolog (C. elegans)"
HGNC name lin-9 DREAM MuvB core complex component
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000440996
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:286826
KEGG GENES KEGG GENES(286826)
GeneCard GeneCardLIN9*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  extracellular;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 230365_at;  235039_x_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 230365_at;  235039_x_at; 
HG-U133_Plus_2 1552771_a_at;  230365_at;  235039_x_at; 
HG-U95 62603_r_at;  81497_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 62603_r_at; 
HG-U95D NA
HG-U95E 81497_at; 
HG-U95Av2 NA
HuEx-1_0 2383131;  2458743;  2458744;  2458745;  2458747;  2458748;  2458749;  2458753;  2458754;  2458755;  2458756;  2458757;  2458758; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P301995; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P301995;  A_32_P233304; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
71 .. 71 T/C rs192543474 - 5'UTR
93 .. 93 A/T rs200701978 - 5'UTR
110 .. 110 T/A rs146968727 - 5'UTR
165 .. 165 A/G rs199567702 - 5'UTR
268 .. 268 G/A rs201671299 - 5'UTR
285 .. 285 C/T rs149663129 - 5'UTR
308 .. 308 T/C rs113700764 - 5'UTR
311 .. 311 T/C rs112266260 - 5'UTR
317 .. 317 T/C rs151010513 - 5'UTR
332 .. 332 G/A rs144126698 - 5'UTR
348 .. 348 A/C rs144324813 - 5'UTR
530 .. 530 A/G rs139603309 - 5'UTR
537 .. 537 A/G rs149356682 - 5'UTR
644 .. 644 A/G rs144086241 - 5'UTR
652 .. 652 C/A rs200459254 - 5'UTR
682 .. 682 A/C rs138510303 - 5'UTR
731 .. 731 C/T rs142771300 - 5'UTR
815 .. 815 C/T rs149035186 - 5'UTR
848 .. 848 C/G rs145608178 - 5'UTR
860 .. 860 T/C rs140382721 - 5'UTR
963 .. 963 C/T rs182468793 - 5'UTR
1064 .. 1064 G/A rs141392755 - 5'UTR
1160 .. 1160 A/G rs61836886 - 5'UTR
1393 .. 1393 G/A rs190646593 - CDS Nonsynonymous[Gly28Ser]
1628 .. 1628 T/A rs111497688 - 3'UTR
1767 .. 1767 A/T rs187348202 - 3'UTR
1790 .. 1790 T/C rs184060115 - 3'UTR
1804 .. 1804 T/- rs112592704 - 3'UTR
1963 .. 1963 C/G rs2377028 + 3'UTR
2034 .. 2034 G/C rs2377029 + 3'UTR
2064 .. 2064 G/A rs148302888 - 3'UTR
2079 .. 2079 G/A rs143275101 - 3'UTR
2265 .. 2265 T/A rs149174065 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer