H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000053852 Accession number: BC052980 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: CGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
 
 

Transcript original information
Accession number BC052980.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:60069 IMAGE:6012191
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (CGGBP1) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (CGGBP1);
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 4403[bp] (No. of exon:3)[A:1390 T:1482 G:781 C:750]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Testis, embryonal carcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 4334(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0003480
Genomic location  G-integra Help Chromosome 3
Location 3p11.1
Position 88101100- 88108048
Strand -
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:8545
KEGG GENES KEGG GENES(8545)
GeneCard GeneCardCGGBP1*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000049855
Predicted CDS 313..816;  167[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.733
Database links RefSeq NP_001008391NP_001182237NP_003654
UniProt Q9UFW8
CCDS CCDS43111

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000053852
H-Inv cluster ID Locus viewHIX0003480
Accession number BC052980.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition CGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9UFW8)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 9201980146678141548933417525332179740052006823121269460ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol CGGBP1
HGNC aliases NA
HGNC name CGG triplet repeat binding protein 1
DDBJ CGGBP1
UniProt CGGBP1
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000049855
No. of interaction 3
Interaction partner(s) HIP000033751HIP000044667HIP000102937
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:8545
KEGG GENES KEGG GENES(8545)
GeneCard GeneCardCGGBP1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT mitochondria;  nuclear;  cytosol;  extracellular; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
39 91 2vrdA1 1e-04 17.0 53/100 g.37.1.4
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA230220; 
Affymetrix
GeneChip
HG-Focus 206861_s_at; 
HG-U133 206861_s_at;  214050_at;  224599_at;  224600_at; 
HG-U133A 206861_s_at;  214050_at; 
HG-U133A_2 206861_s_at;  214050_at; 
HG-U133B 224599_at;  224600_at; 
HG-U133_Plus_2 206861_s_at;  214050_at;  224599_at;  224600_at; 
HG-U95 38696_at;  39562_at;  57717_at;  83666_at; 
HG-U95A 38696_at;  39562_at; 
HG-U95B 57717_at; 
HG-U95C NA
HG-U95D NA
HG-U95E 83666_at; 
HG-U95Av2 NA
HuEx-1_0 2631994;  2631995;  2631997;  2631999;  2632005;  2685035;  2685036;  2685037;  2685038;  2685039;  2685043;  2685046; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P155276;  A_23_P363156; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P155276;  A_23_P363163; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) BC043097 MGI:2146370 G-integraG-integra
Orthology Equus sp. (Horse) ENSECAT00000005235 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000015859 G-integraG-integra
Orthology Rattus sp. (Rat) XM_001063614 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001082501 G-integraG-integra
Orthology Gallus sp. (Chicken) XM_001232948 G-integraG-integra
Orthology Monodelphis sp. (Opossum) XM_001363764 G-integraG-integra
Orthology Canis sp. (Dog) XM_535549 G-integraG-integra
Orthology Bos sp. (Cow) XM_611424 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
9 .. 9 G/A rs181952648 - 5'UTR
16 .. 16 T/A rs9310065 - 5'UTR
28 .. 28 C/G rs189456094 - 5'UTR
60 .. 60 G/C rs10858 + 5'UTR
66 .. 66 C/G rs184670194 - 5'UTR
67 .. 67 G/A rs144167335 - 5'UTR
255 .. 255 A/G rs145472486 - 5'UTR
279 .. 279 A/G/T rs8274 + 5'UTR
720 .. 720 T/C rs192105333 - CDS Synonymous[Asn136Asn]
759 .. 759 A/G rs200198760 - CDS Synonymous[Ala149Ala]
824 .. 824 G/A rs114905975 - 3'UTR
830 .. 830 A/C rs1053231 + 3'UTR
875 .. 875 A/G rs188064898 - 3'UTR
920 .. 920 C/T rs183364758 - 3'UTR
1028 .. 1028 G/T rs1006896 + 3'UTR
1190 .. 1190 C/T rs76844407 - 3'UTR
1241 ^ 1242 -/GA rs10619778 - 3'UTR
1258 .. 1258 C/A rs191051728 - 3'UTR
1276 .. 1276 G/A rs111415745 - 3'UTR
1277 .. 1277 A/G rs113138354 - 3'UTR
1278 .. 1278 G/T rs201851715 - 3'UTR
1278 .. 1279 GA/- rs72591131 - 3'UTR
1321 .. 1321 A/C rs77318518 - 3'UTR
1391 .. 1391 C/T rs187464002 - 3'UTR
1465 .. 1465 A/G rs183324663 - 3'UTR
1502 .. 1502 C/T rs1063597 + 3'UTR
1530 .. 1530 T/C rs73844837 - 3'UTR
1627 .. 1627 C/T rs151132244 - 3'UTR
1650 .. 1650 A/G rs115203275 - 3'UTR
1658 .. 1658 C/T rs72921637 - 3'UTR
1719 .. 1719 T/C rs116279118 - 3'UTR
1758 .. 1758 G/T rs76522081 - 3'UTR
1784 .. 1784 T/C rs142061194 - 3'UTR
1786 .. 1786 A/G rs149044549 - 3'UTR
1832 .. 1832 G/T rs2116149 - 3'UTR
1958 .. 1958 G/A rs59957170 - 3'UTR
2107 .. 2107 A/G rs186427392 - 3'UTR
2133 .. 2133 G/T rs181666661 - 3'UTR
2162 .. 2162 G/C rs190481215 - 3'UTR
2197 .. 2197 T/C rs186266951 - 3'UTR
2259 .. 2259 A/G rs80019387 - 3'UTR
2315 .. 2315 A/G rs144941160 - 3'UTR
2531 .. 2531 A/G rs181747363 - 3'UTR
2626 .. 2626 G/A rs6777019 - 3'UTR
2637 .. 2637 C/T rs145166339 - 3'UTR
2650 .. 2650 T/C rs140055581 - 3'UTR
2676 .. 2676 G/A rs28362507 + 3'UTR
2677 .. 2677 C/T rs1051383 + 3'UTR
2704 .. 2704 A/G rs147514915 - 3'UTR
2778 .. 2778 A/G rs189507550 - 3'UTR
2856 .. 2856 G/A rs116629767 - 3'UTR
3130 .. 3130 A/G rs112176545 - 3'UTR
3141 .. 3141 G/T rs11128020 + 3'UTR
3577 ^ 3578 -/ATTT rs200729010 - 3'UTR
3668 .. 3668 G/A rs150704989 - 3'UTR
3691 .. 3691 C/T rs141835951 - 3'UTR
3740 .. 3740 C/A rs1051413 + 3'UTR
3743 .. 3743 C/T rs184178351 - 3'UTR
3811 .. 3811 C/A rs200986847 - 3'UTR
3883 .. 3883 C/T rs1063603 + 3'UTR
3904 .. 3904 A/G rs1051436 + 3'UTR
3949 .. 3949 T/C rs7628939 - 3'UTR
4076 .. 4076 G/A rs14746 - 3'UTR
4095 .. 4095 A/G rs144720743 - 3'UTR
4267 .. 4267 T/A rs180794037 - 3'UTR
4268 .. 4268 C/A rs189720196 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer