H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
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Definition*
Data source ID
---
CCDS ID
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HGNC gene name*
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H-Invitational ID:
HIT000070794
Accession number:
AF131789
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AF131789.1
CAGE tag ID
NA
EST ID
NA
Clone Number
25088
Experimental resources
NBRC
;
HGPD
;
Antibody (FAM49A)
;
Catalog (FAM49A)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
2008[bp] (No. of exon:1)[A:585 T:604 G:422 C:397]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 1976(+) Signal: 1956-1960(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GTTATTTGTGAGTTTAGCAACCTTCCAGTTACCTGCAGAGTTCTGGGTGC ACAGCCACCCCTCATAAGAGCCCTGTTCTCTGAAGACCATTCATATGAGA ACAAAGGTCTAGGATACTGCATTAGTTACCAGAAAACTAGGGGAATTTAG AGGGAAAAAAAATCCATGTTTTCTATTTCCCAGGTTTTTAAAAAGTAGCT CTTCCCCAACCCCGTTGCTAGCTTGTTGCAATATAAAAGCCCTGGTGCAC CTGAATTTACTCCTGGCCTTACTAATGATTCATAATGTGATCTTGAGAAA TGTGTTTAAGCTTTCTGAGTCTTAACCTCCTTGTCTCTAAAATGGGCAAT TAAAACAATCTTCAAGAGCCCTGTAAGGTTAATGCCGATAAAATGACTGA CTCCGCCCTTCTTCCTTAGTACGTAGTATCCAGCAAGCATTTGCCCCACC TTGTCTTGTTGATGAACAATATTATGAAGCCTGCAGTCATTCTCTCTGTA CATCAGAGCTTAGTTCGAATGGAATCATGAAAATCTCTGATTCTGACCTC CTAAGGAAAAATGAAACCCAGAGGATGTGGTCATACAGGATGGCTCCCAT GTGGGCCTAGAACCCAGGATGCTTCACTCTTGACTCCATGCTCTTCCTTT TATACCATGTGGCTGTGAATACATACTATGGGATGGGATTCAACCCTTCT AAGTAAATCCTCAGTCTGGTCTATATTGTTACTTGCCTGTTTCCACTAGA AGGAGTCACCCAGGCATTTAGTGAATGATAATCCTAGAAGTTGAGTCTGA GTACATCAGAGTTTGGCATTATTTGCAACATCCCAGGAATGAGCTATAAG ACTCCATTGCTTTCTGGACTTTAGTGACCAGCTGATCTTCCCTTGGATCC TCCAATAAAGGGGAAAAAATACTTGTCTTATGTTGTTTTAGCAAGGGAGT TCAGCCAAGTGACAGGAAAGATTCCCTGGTCTGCATCTAAACATTAGTCA ACAGAAGGAAAAGGCTCTTTTCCTTGGAGATTTTCAAGTTGAAAAAGTAC AGCTGCTTGGATGGAGTTTCTCTCATCAGAATAGAAATATGCTAGGTGGT CTTCAAGACCTTTTTGAACCTACAGATTCTAAACCTTAGAGGAAGCCAGA ATATGTGATCATACCAGGTGAGGAAAGTTAGGAGATATTCATCTTAAGAG ATATCCTATTTGGCAGTCACATGTTACACTTGAGCAACAATTGTCTAGGC TAGAAATATAGAACCACACAATATTTATCATCATTGGGTCAATTTCTCCC CCTCTATCAAGTGAGGAGATTAAGGCTTAAAGAAAGGAAAGGACTTGCCA GCCACCACAGGGCTCATGAGGGGCTTGAACCCATGTCGTGTGTCTCTACC ACAGCTGACTCTCAGCTGGCTAATGGAGAAAATGTGAGGAATTACCTGTC AAATTAGATTGAGCTCAGAGTAAATAGATGAGCACATTTATAACTCTAAA TTAGACTTTCTATCAAATGGGACCAAACATATGGAAGGGGCTGCTGTCCT GCCTCAATTTAGCCAAGACTTGTCTTGTCTCAAAGCCAAGACTCAGCAGT ACATGGATTCTGAGAAGTCCAGGGTCTGAATTGTTGTCTCTGATTACTGG AAGGACAGGTTAACTGAATGTCTGTGATCACTAACAGGTGATGGGCTTTG TGCCCACTCCAGAGATATTGTGGGAGACAAATTCTTTTAACAGCCTGTCC TCCCGGCATCAGGAGTCATTGAACAATCATGGATTGTTGTGTTTGGGATT TTTTTTTTTTTGGCTTTGTTTTTGGTTTTTGTGTGTGTGTGTGTGTGCTG CATGCACATGCGTCCAAGACTTACGGGTGGTTTAGGGGAAAGTGCTAGCA ACAGTGTCAATGTCATTGTTAACTATATTTCATATTTGAGGTCTCATTGT TTTCAAATAAACAGTGTTTTCCATGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0001843
Genomic location
Chromosome
2
Location
2p24.2
Position
16731408- 16733383
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000056328
Predicted CDS
1691..1885; 64[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.722
MGFVPTPEILWETNSFNSLSSRHQESLNNHGLLCLGFFFFWLCFWFLCVC VCAACTCVQDLRVV*
Gene function information
H-Inv ID
HIT000070794
H-Inv cluster ID
HIX0001843
Accession number
AF131789.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
FAM49A
HGNC aliases
NA
HGNC name
family with sequence similarity 49, member A
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000056328
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; extracellular; plasma membrane; Other;
Target P
Other
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
209683_at;
HG-U133A
209683_at;
HG-U133A_2
209683_at;
HG-U133B
NA
HG-U133_Plus_2
209683_at;
HG-U95
64419_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
64419_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2471007; 2471008; 2541716; 2541717;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
93 .. 93
A/G
rs140821557
-
5'UTR
165 ^ 166
-/C
rs34999982
-
5'UTR
239 .. 239
G/C
rs150555071
-
5'UTR
299 .. 299
A/G
rs181447569
-
5'UTR
330 .. 330
C/T
rs10172734
-
5'UTR
360 .. 360
C/A
rs141752407
-
5'UTR
448 .. 448
A/G
rs115727761
-
5'UTR
516 .. 516
C/T
rs148476014
-
5'UTR
746 .. 746
C/T
rs144649696
-
5'UTR
840 .. 840
T/C
rs141519598
-
5'UTR
951 .. 951
T/C
rs191215873
-
5'UTR
993 .. 993
A/C
rs4263114
-
5'UTR
1109 .. 1109
C/A
rs4240234
-
5'UTR
1140 .. 1140
A/G
rs13032689
-
5'UTR
1362 .. 1362
G/A
rs138506495
-
5'UTR
1448 .. 1448
G/A
rs186408032
-
5'UTR
1497 .. 1497
T/C
rs181027379
-
5'UTR
1509 .. 1509
T/C
rs189079330
-
5'UTR
1579 .. 1579
C/T
rs60444781
-
5'UTR
1597 .. 1597
C/T
rs144605748
-
5'UTR
1621 .. 1621
A/G
rs7578073
-
5'UTR
1741 ^ 1742
-/C
rs143648127
-
CDS
1755 .. 1755
G/A
rs137989534
-
CDS
Nonsynonymous[Arg22Gln]
1798 ^ 1799
-/T/TT
rs57899785
-
CDS
1810 ^ 1811
-/T/TT
rs72047801
-
CDS
1811 .. 1811
T/G
rs75730706
-
CDS
Nonsynonymous[Trp41Gly]
1811 ^ 1812
-/T
rs35003671
-
CDS
1830 .. 1830
T/C
rs150241862
-
CDS
Nonsynonymous[Leu47Ser]
1831 .. 1831
G/T
rs184331937
-
CDS
Nonsynonymous[Leu47Phe]
1833 .. 1833
G/T
rs181325164
-
CDS
Nonsynonymous[Cys48Phe]
1874 .. 1874
C/T
rs15653
-
CDS
Nonsynonymous[Arg62Trp]
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIRb
249
396
+
MIR3
503
648
-
MIR3
1280
1396
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;