H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000070794 Accession number: AF131789 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AF131789.1
CAGE tag ID NA
EST ID NA
Clone Number 25088
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (FAM49A) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (FAM49A);
Sequence data provider NA
Annotation project NA
Length of cDNA 2008[bp] (No. of exon:1)[A:585 T:604 G:422 C:397]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1976(+) Signal: 1956-1960(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001843
Genomic location  G-integra Help Chromosome 2
Location 2p24.2
Position 16731408- 16733383
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000056328
Predicted CDS 1691..1885;  64[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.722

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000070794
H-Inv cluster ID Locus viewHIX0001843
Accession number AF131789.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM49A
HGNC aliases NA
HGNC name family with sequence similarity 49, member A
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000056328
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  extracellular;  plasma membrane;  Other; 
Target P Other
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 209683_at; 
HG-U133A 209683_at; 
HG-U133A_2 209683_at; 
HG-U133B NA
HG-U133_Plus_2 209683_at; 
HG-U95 64419_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 64419_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2471007;  2471008;  2541716;  2541717; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
93 .. 93 A/G rs140821557 - 5'UTR
165 ^ 166 -/C rs34999982 - 5'UTR
239 .. 239 G/C rs150555071 - 5'UTR
299 .. 299 A/G rs181447569 - 5'UTR
330 .. 330 C/T rs10172734 - 5'UTR
360 .. 360 C/A rs141752407 - 5'UTR
448 .. 448 A/G rs115727761 - 5'UTR
516 .. 516 C/T rs148476014 - 5'UTR
746 .. 746 C/T rs144649696 - 5'UTR
840 .. 840 T/C rs141519598 - 5'UTR
951 .. 951 T/C rs191215873 - 5'UTR
993 .. 993 A/C rs4263114 - 5'UTR
1109 .. 1109 C/A rs4240234 - 5'UTR
1140 .. 1140 A/G rs13032689 - 5'UTR
1362 .. 1362 G/A rs138506495 - 5'UTR
1448 .. 1448 G/A rs186408032 - 5'UTR
1497 .. 1497 T/C rs181027379 - 5'UTR
1509 .. 1509 T/C rs189079330 - 5'UTR
1579 .. 1579 C/T rs60444781 - 5'UTR
1597 .. 1597 C/T rs144605748 - 5'UTR
1621 .. 1621 A/G rs7578073 - 5'UTR
1741 ^ 1742 -/C rs143648127 - CDS
1755 .. 1755 G/A rs137989534 - CDS Nonsynonymous[Arg22Gln]
1798 ^ 1799 -/T/TT rs57899785 - CDS
1810 ^ 1811 -/T/TT rs72047801 - CDS
1811 .. 1811 T/G rs75730706 - CDS Nonsynonymous[Trp41Gly]
1811 ^ 1812 -/T rs35003671 - CDS
1830 .. 1830 T/C rs150241862 - CDS Nonsynonymous[Leu47Ser]
1831 .. 1831 G/T rs184331937 - CDS Nonsynonymous[Leu47Phe]
1833 .. 1833 G/T rs181325164 - CDS Nonsynonymous[Cys48Phe]
1874 .. 1874 C/T rs15653 - CDS Nonsynonymous[Arg62Trp]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 249 396 +
MIR3 503 648 -
MIR3 1280 1396 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer