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H-Invitational ID: HIT000071753 Accession number: AF152327 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protocadherin gamma-A7; PCDH-gamma-A7; Precursor;
 
 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
27 .. 27 C/T rs118021618 + CDS Synonymous[Asp9Asp]
54 .. 54 C/G rs188768340 + CDS Nonsynonymous[Ile18Met]
61 .. 61 G/C rs62621829 + CDS Nonsynonymous[Gly21Arg]
67 .. 67 C/A rs36077896 + CDS Nonsynonymous[Pro23Thr]
88 .. 88 C/A rs202040451 + CDS Nonsynonymous[Arg30Ser]
193 .. 193 C/T rs200016406 + CDS Nonsynonymous[Arg65Cys]
253 .. 253 G/A rs200500982 + CDS Nonsynonymous[Val85Ile]
297 .. 297 T/C rs7704696 + CDS Synonymous[Ser99Ser]
298 .. 298 G/C rs184479480 + CDS Nonsynonymous[Ala100Pro]
324 .. 324 C/T rs76873890 + CDS Synonymous[Ile108Ile]
430 .. 430 G/A rs143729030 + CDS Nonsynonymous[Glu144Lys]
453 .. 453 G/T rs115561507 + CDS Synonymous[Arg151Arg]
506 .. 506 G/A/T rs189408749 + CDS
510 .. 510 C/A rs199780721 + CDS AA-STOP[Tyr170*]
527 .. 527 G/A rs72790024 + CDS Nonsynonymous[Arg176His]
554 .. 554 G/C rs116033027 + CDS Nonsynonymous[Gly185Ala]
563 .. 563 A/G rs2072315 + CDS Nonsynonymous[Glu188Gly]
566 .. 566 C/A rs199737560 + CDS Nonsynonymous[Thr189Asn]
592 .. 592 C/A rs116533786 + CDS Synonymous[Arg198Arg]
634 .. 634 C/T rs2240698 + CDS Nonsynonymous[Leu212Phe]
677 ^ 678 -/C rs35531790 + CDS
681 .. 681 C/- rs34013361 + CDS
716 .. 716 C/T rs17097251 + CDS Nonsynonymous[Thr239Met]
812 .. 812 A/G rs201269369 + CDS Nonsynonymous[Glu271Gly]
851 .. 851 T/A rs148240637 + CDS Nonsynonymous[Ile284Lys]
857 .. 857 C/T rs62620755 + CDS Nonsynonymous[Pro286Leu]
873 .. 873 G/A rs187406135 + CDS Nonsynonymous[Met291Ile]
904 .. 904 T/C rs141242913 + CDS Nonsynonymous[Ser302Pro]
941 .. 941 T/C rs190731749 + CDS Nonsynonymous[Phe314Ser]
1001 ^ 1002 -/A rs34002305 + CDS
1024 .. 1024 G/T rs201582947 + CDS Nonsynonymous[Asp342Tyr]
1049 .. 1049 C/G rs199642192 + CDS Nonsynonymous[Thr350Arg]
1081 .. 1081 C/G rs145468093 + CDS Nonsynonymous[Pro361Ala]
1093 .. 1093 G/T rs138087785 + CDS Nonsynonymous[Val365Phe]
1149 .. 1149 C/A rs111794989 + CDS Synonymous[Thr383Thr]
1199 .. 1199 A/G rs185786686 + CDS Nonsynonymous[Asn400Ser]
1337 .. 1337 A/G rs199759698 + CDS Nonsynonymous[Asn446Ser]
1422 .. 1422 G/A rs6883770 + CDS Synonymous[Val474Val]
1476 .. 1476 C/T rs190245807 + CDS Synonymous[Ala492Ala]
1485 .. 1485 C/A rs142665639 + CDS Synonymous[Thr495Thr]
1546 .. 1546 G/A rs182497799 + CDS Nonsynonymous[Ala516Thr]
1557 .. 1557 C/A rs145938509 + CDS Synonymous[Ser519Ser]
1572 .. 1572 G/T rs200621761 + CDS Nonsynonymous[Gln524His]
1596 .. 1596 G/A rs187774047 + CDS Synonymous[Val532Val]
1752 .. 1752 C/T rs138410124 + CDS Synonymous[Pro584Pro]
1803 .. 1803 C/T rs115492697 + CDS Synonymous[Asn601Asn]
1854 .. 1854 G/C rs114533608 + CDS Synonymous[Ala618Ala]
1901 .. 1901 A/T rs191053275 + CDS Nonsynonymous[Asp634Val]
1923 .. 1923 C/T rs149266522 + CDS Synonymous[Ser641Ser]
1928 .. 1928 T/A/G rs182404532 + CDS
1965 .. 1965 A/G rs202180798 + CDS Synonymous[Ser655Ser]
2138 .. 2138 C/A rs189127761 + CDS Nonsynonymous[Ala713Glu]
2281 .. 2281 G/A rs200338637 + CDS Nonsynonymous[Ala761Thr]
2282 .. 2282 C/A rs201394036 + CDS Nonsynonymous[Ala761Glu]
2376 .. 2376 A/G rs115152670 + CDS Synonymous[Leu792Leu]
2461 .. 2461 G/A rs201391904 + CDS Nonsynonymous[Ala821Thr]
2473 .. 2473 G/A rs200418116 + CDS Nonsynonymous[Gly825Ser]
2529 .. 2529 T/C rs149352680 + CDS Synonymous[Phe843Phe]
2628 .. 2628 C/T rs143630962 + CDS Synonymous[Ser876Ser]
2629 .. 2629 G/A rs114669158 + CDS Nonsynonymous[Ala877Thr]
2632 .. 2632 C/T rs148119281 + CDS Nonsynonymous[Arg878Cys]
2637 .. 2637 C/T rs141873183 + CDS Synonymous[Tyr879Tyr]
2640 .. 2640 A/G rs2233612 + CDS Synonymous[Gly880Gly]
2662 .. 2662 G/A rs116366286 + CDS Nonsynonymous[Val888Met]
2675 .. 2675 G/A rs61749029 + CDS Nonsynonymous[Arg892His]
2702 .. 2702 A/G rs201009079 + CDS Nonsynonymous[Asn901Ser]
2718 .. 2718 C/T rs143362044 + CDS Synonymous[Asn906Asn]
2761 .. 2761 G/A rs200541479 + CDS Nonsynonymous[Gly921Ser]
2777 .. 2777 C/T rs202071188 + CDS Nonsynonymous[Ser926Leu]
2796 .. 2796 G/A rs147534370 + CDS Synonymous[Lys932Lys]
2828 .. 2828 C/T rs201024828 + 3'UTR
2829 .. 2829 G/A rs2233613 + 3'UTR
2934 .. 2934 G/A rs76613492 + 3'UTR
2990 .. 2990 T/C rs115159796 + 3'UTR
3000 .. 3000 C/A rs191106767 + 3'UTR
3236 .. 3236 C/A rs146235929 + 3'UTR
3254 .. 3254 G/C rs4912608 + 3'UTR
3329 .. 3329 T/G rs148447880 + 3'UTR
3491 .. 3491 G/A rs142624814 + 3'UTR
3512 .. 3512 T/C rs113814137 + 3'UTR
3518 .. 3518 C/T rs150999050 + 3'UTR
3525 .. 3525 T/G rs187622252 + 3'UTR
3714 .. 3714 A/G rs192947391 + 3'UTR
3797 .. 3797 T/C rs140884268 + 3'UTR
3820 .. 3820 G/A rs111365449 + 3'UTR
4011 .. 4011 A/G rs78180647 + 3'UTR
4079 .. 4079 G/A rs185198109 + 3'UTR
4172 .. 4172 C/T rs147780926 + 3'UTR
4465 .. 4465 C/T rs141207714 + 3'UTR
4484 .. 4484 G/T rs189734474 + 3'UTR
4540 .. 4540 C/T rs112402554 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Mini-G

 Repeat  Repeat mask viewer
Type Start End Strand
AmnSINE1 682 793 +
X6A_LINE 753 840 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer