H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
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H-Invitational ID:
HIT000071753
Accession number:
AF152327
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Protocadherin gamma-A7; PCDH-gamma-A7; Precursor;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
27 .. 27
C/T
rs118021618
+
CDS
Synonymous[Asp9Asp]
54 .. 54
C/G
rs188768340
+
CDS
Nonsynonymous[Ile18Met]
61 .. 61
G/C
rs62621829
+
CDS
Nonsynonymous[Gly21Arg]
67 .. 67
C/A
rs36077896
+
CDS
Nonsynonymous[Pro23Thr]
88 .. 88
C/A
rs202040451
+
CDS
Nonsynonymous[Arg30Ser]
193 .. 193
C/T
rs200016406
+
CDS
Nonsynonymous[Arg65Cys]
253 .. 253
G/A
rs200500982
+
CDS
Nonsynonymous[Val85Ile]
297 .. 297
T/C
rs7704696
+
CDS
Synonymous[Ser99Ser]
298 .. 298
G/C
rs184479480
+
CDS
Nonsynonymous[Ala100Pro]
324 .. 324
C/T
rs76873890
+
CDS
Synonymous[Ile108Ile]
430 .. 430
G/A
rs143729030
+
CDS
Nonsynonymous[Glu144Lys]
453 .. 453
G/T
rs115561507
+
CDS
Synonymous[Arg151Arg]
506 .. 506
G/A/T
rs189408749
+
CDS
510 .. 510
C/A
rs199780721
+
CDS
AA-STOP[Tyr170*]
527 .. 527
G/A
rs72790024
+
CDS
Nonsynonymous[Arg176His]
554 .. 554
G/C
rs116033027
+
CDS
Nonsynonymous[Gly185Ala]
563 .. 563
A/G
rs2072315
+
CDS
Nonsynonymous[Glu188Gly]
566 .. 566
C/A
rs199737560
+
CDS
Nonsynonymous[Thr189Asn]
592 .. 592
C/A
rs116533786
+
CDS
Synonymous[Arg198Arg]
634 .. 634
C/T
rs2240698
+
CDS
Nonsynonymous[Leu212Phe]
677 ^ 678
-/C
rs35531790
+
CDS
681 .. 681
C/-
rs34013361
+
CDS
716 .. 716
C/T
rs17097251
+
CDS
Nonsynonymous[Thr239Met]
812 .. 812
A/G
rs201269369
+
CDS
Nonsynonymous[Glu271Gly]
851 .. 851
T/A
rs148240637
+
CDS
Nonsynonymous[Ile284Lys]
857 .. 857
C/T
rs62620755
+
CDS
Nonsynonymous[Pro286Leu]
873 .. 873
G/A
rs187406135
+
CDS
Nonsynonymous[Met291Ile]
904 .. 904
T/C
rs141242913
+
CDS
Nonsynonymous[Ser302Pro]
941 .. 941
T/C
rs190731749
+
CDS
Nonsynonymous[Phe314Ser]
1001 ^ 1002
-/A
rs34002305
+
CDS
1024 .. 1024
G/T
rs201582947
+
CDS
Nonsynonymous[Asp342Tyr]
1049 .. 1049
C/G
rs199642192
+
CDS
Nonsynonymous[Thr350Arg]
1081 .. 1081
C/G
rs145468093
+
CDS
Nonsynonymous[Pro361Ala]
1093 .. 1093
G/T
rs138087785
+
CDS
Nonsynonymous[Val365Phe]
1149 .. 1149
C/A
rs111794989
+
CDS
Synonymous[Thr383Thr]
1199 .. 1199
A/G
rs185786686
+
CDS
Nonsynonymous[Asn400Ser]
1337 .. 1337
A/G
rs199759698
+
CDS
Nonsynonymous[Asn446Ser]
1422 .. 1422
G/A
rs6883770
+
CDS
Synonymous[Val474Val]
1476 .. 1476
C/T
rs190245807
+
CDS
Synonymous[Ala492Ala]
1485 .. 1485
C/A
rs142665639
+
CDS
Synonymous[Thr495Thr]
1546 .. 1546
G/A
rs182497799
+
CDS
Nonsynonymous[Ala516Thr]
1557 .. 1557
C/A
rs145938509
+
CDS
Synonymous[Ser519Ser]
1572 .. 1572
G/T
rs200621761
+
CDS
Nonsynonymous[Gln524His]
1596 .. 1596
G/A
rs187774047
+
CDS
Synonymous[Val532Val]
1752 .. 1752
C/T
rs138410124
+
CDS
Synonymous[Pro584Pro]
1803 .. 1803
C/T
rs115492697
+
CDS
Synonymous[Asn601Asn]
1854 .. 1854
G/C
rs114533608
+
CDS
Synonymous[Ala618Ala]
1901 .. 1901
A/T
rs191053275
+
CDS
Nonsynonymous[Asp634Val]
1923 .. 1923
C/T
rs149266522
+
CDS
Synonymous[Ser641Ser]
1928 .. 1928
T/A/G
rs182404532
+
CDS
1965 .. 1965
A/G
rs202180798
+
CDS
Synonymous[Ser655Ser]
2138 .. 2138
C/A
rs189127761
+
CDS
Nonsynonymous[Ala713Glu]
2281 .. 2281
G/A
rs200338637
+
CDS
Nonsynonymous[Ala761Thr]
2282 .. 2282
C/A
rs201394036
+
CDS
Nonsynonymous[Ala761Glu]
2376 .. 2376
A/G
rs115152670
+
CDS
Synonymous[Leu792Leu]
2461 .. 2461
G/A
rs201391904
+
CDS
Nonsynonymous[Ala821Thr]
2473 .. 2473
G/A
rs200418116
+
CDS
Nonsynonymous[Gly825Ser]
2529 .. 2529
T/C
rs149352680
+
CDS
Synonymous[Phe843Phe]
2628 .. 2628
C/T
rs143630962
+
CDS
Synonymous[Ser876Ser]
2629 .. 2629
G/A
rs114669158
+
CDS
Nonsynonymous[Ala877Thr]
2632 .. 2632
C/T
rs148119281
+
CDS
Nonsynonymous[Arg878Cys]
2637 .. 2637
C/T
rs141873183
+
CDS
Synonymous[Tyr879Tyr]
2640 .. 2640
A/G
rs2233612
+
CDS
Synonymous[Gly880Gly]
2662 .. 2662
G/A
rs116366286
+
CDS
Nonsynonymous[Val888Met]
2675 .. 2675
G/A
rs61749029
+
CDS
Nonsynonymous[Arg892His]
2702 .. 2702
A/G
rs201009079
+
CDS
Nonsynonymous[Asn901Ser]
2718 .. 2718
C/T
rs143362044
+
CDS
Synonymous[Asn906Asn]
2761 .. 2761
G/A
rs200541479
+
CDS
Nonsynonymous[Gly921Ser]
2777 .. 2777
C/T
rs202071188
+
CDS
Nonsynonymous[Ser926Leu]
2796 .. 2796
G/A
rs147534370
+
CDS
Synonymous[Lys932Lys]
2828 .. 2828
C/T
rs201024828
+
3'UTR
2829 .. 2829
G/A
rs2233613
+
3'UTR
2934 .. 2934
G/A
rs76613492
+
3'UTR
2990 .. 2990
T/C
rs115159796
+
3'UTR
3000 .. 3000
C/A
rs191106767
+
3'UTR
3236 .. 3236
C/A
rs146235929
+
3'UTR
3254 .. 3254
G/C
rs4912608
+
3'UTR
3329 .. 3329
T/G
rs148447880
+
3'UTR
3491 .. 3491
G/A
rs142624814
+
3'UTR
3512 .. 3512
T/C
rs113814137
+
3'UTR
3518 .. 3518
C/T
rs150999050
+
3'UTR
3525 .. 3525
T/G
rs187622252
+
3'UTR
3714 .. 3714
A/G
rs192947391
+
3'UTR
3797 .. 3797
T/C
rs140884268
+
3'UTR
3820 .. 3820
G/A
rs111365449
+
3'UTR
4011 .. 4011
A/G
rs78180647
+
3'UTR
4079 .. 4079
G/A
rs185198109
+
3'UTR
4172 .. 4172
C/T
rs147780926
+
3'UTR
4465 .. 4465
C/T
rs141207714
+
3'UTR
4484 .. 4484
G/T
rs189734474
+
3'UTR
4540 .. 4540
C/T
rs112402554
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
AmnSINE1
682
793
+
X6A_LINE
753
840
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;