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H-Invitational ID: HIT000071808 Accession number: AF152504 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protocadherin gamma-A11; PCDH-gamma-A11; Precursor;
 
 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
6 .. 6 G/A rs201076931 + CDS Synonymous[Ala2Ala]
16 .. 16 C/A rs201273667 + CDS Nonsynonymous[Gln6Lys]
60 ^ 61 -/C rs35600583 + CDS
70 .. 70 C/T rs143092131 + CDS Synonymous[Leu24Leu]
84 .. 84 G/A rs199877605 + CDS Synonymous[Arg28Arg]
86 .. 86 C/T rs201429116 + CDS Nonsynonymous[Ala29Val]
115 .. 115 G/A rs199737254 + CDS Nonsynonymous[Glu39Lys]
120 .. 120 C/T rs147068995 + CDS Synonymous[Thr40Thr]
121 .. 121 G/C rs202220769 + CDS Nonsynonymous[Glu41Gln]
162 .. 162 G/A rs200646513 + CDS Synonymous[Gly54Gly]
289 .. 289 T/G rs199973694 + CDS Nonsynonymous[Cys97Gly]
306 .. 306 C/T rs80184002 + CDS Synonymous[Ser102Ser]
310 .. 310 T/C rs11167744 + CDS Nonsynonymous[Phe104Leu]
368 .. 368 A/G rs77665158 + CDS Nonsynonymous[Glu123Gly]
399 .. 399 C/G rs201673318 + CDS Nonsynonymous[Ser133Arg]
504 .. 504 C/A rs73792198 + CDS Synonymous[Leu168Leu]
604 .. 604 G/C rs201283981 + CDS Nonsynonymous[Asp202His]
632 .. 632 T/C rs138408376 + CDS Nonsynonymous[Leu211Pro]
642 .. 642 A/G rs200015978 + CDS Synonymous[Thr214Thr]
714 .. 714 T/C rs186605459 + CDS Synonymous[Asp238Asp]
726 .. 726 G/A rs193141134 + CDS Nonsynonymous[Met242Ile]
757 .. 757 C/G rs201871921 + CDS Nonsynonymous[Pro253Ala]
784 .. 784 G/T rs200879435 + CDS Nonsynonymous[Val262Leu]
799 .. 799 G/A rs118080774 + CDS Nonsynonymous[Ala267Thr]
977 .. 977 G/A rs185669562 + CDS Nonsynonymous[Gly326Glu]
1069 .. 1069 A/G rs200545713 + CDS Nonsynonymous[Ile357Val]
1082 .. 1082 C/T rs199660151 + CDS Nonsynonymous[Ser361Phe]
1103 .. 1103 C/T rs200342957 + CDS Nonsynonymous[Ala368Val]
1156 .. 1156 T/C rs201301291 + CDS Nonsynonymous[Phe386Leu]
1208 .. 1208 A/G rs199795822 + CDS Nonsynonymous[Tyr403Cys]
1209 .. 1209 C/T rs200737047 + CDS Synonymous[Tyr403Tyr]
1405 .. 1405 G/T rs199543811 + CDS Nonsynonymous[Gly469Cys]
1428 .. 1428 C/T rs188587553 + CDS Synonymous[Thr476Thr]
1522 .. 1522 A/G rs202046219 + CDS Nonsynonymous[Ile508Val]
1580 .. 1580 G/A rs199507728 + CDS Nonsynonymous[Arg527Gln]
1605 .. 1605 A/G rs12520854 + CDS Synonymous[Ala535Ala]
1611 .. 1611 C/T rs201218542 + CDS Synonymous[Asp537Asp]
1623 .. 1623 G/A rs184432819 + CDS Synonymous[Pro541Pro]
1640 .. 1640 T/C rs116031289 + CDS Nonsynonymous[Val547Ala]
1657 .. 1657 G/C rs202035589 + CDS Nonsynonymous[Val553Leu]
1662 .. 1662 G/A rs62378455 + CDS Synonymous[Leu554Leu]
1693 .. 1693 T/G rs13173779 + CDS Nonsynonymous[Tyr565Asp]
1696 .. 1696 C/T rs188787674 + CDS Nonsynonymous[Pro566Ser]
1704 .. 1704 C/T rs13188208 + CDS Synonymous[Leu568Leu]
1715 .. 1715 G/T rs199976232 + CDS Nonsynonymous[Gly572Val]
1716 .. 1716 C/G rs13188214 + CDS Synonymous[Gly572Gly]
1718 .. 1718 C/T rs13188215 + CDS Nonsynonymous[Ser573Phe]
1770 .. 1770 C/T rs114907564 + CDS Synonymous[Thr590Thr]
1775 .. 1775 T/G rs13173820 + CDS Nonsynonymous[Val592Gly]
1824 .. 1824 C/T rs200022455 + CDS Synonymous[Arg608Arg]
1826 .. 1826 T/C rs200154593 + CDS Nonsynonymous[Leu609Pro]
1862 .. 1862 G/C rs201821221 + CDS Nonsynonymous[Gly621Ala]
1869 .. 1869 C/T rs200931939 + CDS Synonymous[His623His]
1915 .. 1915 G/A rs201391904 + CDS Nonsynonymous[Ala639Thr]
1927 .. 1927 G/A rs200418116 + CDS Nonsynonymous[Gly643Ser]
1983 .. 1983 T/C rs149352680 + CDS Synonymous[Phe661Phe]
2082 .. 2082 C/T rs143630962 + CDS Synonymous[Ser694Ser]
2083 .. 2083 G/A rs114669158 + CDS Nonsynonymous[Ala695Thr]
2086 .. 2086 C/T rs148119281 + CDS Nonsynonymous[Arg696Cys]
2091 .. 2091 C/T rs141873183 + CDS Synonymous[Tyr697Tyr]
2094 .. 2094 A/G rs2233612 + CDS Synonymous[Gly698Gly]
2116 .. 2116 G/A rs116366286 + CDS Nonsynonymous[Val706Met]
2129 .. 2129 G/A rs61749029 + CDS Nonsynonymous[Arg710His]
2156 .. 2156 A/G rs201009079 + CDS Nonsynonymous[Asn719Ser]
2172 .. 2172 C/T rs143362044 + CDS Synonymous[Asn724Asn]
2215 .. 2215 G/A rs200541479 + CDS Nonsynonymous[Gly739Ser]
2231 .. 2231 C/T rs202071188 + CDS Nonsynonymous[Ser744Leu]
2250 .. 2250 G/A rs147534370 + CDS Synonymous[Lys750Lys]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Mini-G

 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer