H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000076782 Accession number: AF305686 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protein Njmu-R1.
 
 

Transcript original information
Accession number AF305686.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (C17orf75) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (C17orf75);
Sequence data provider NA
Annotation project NA
Length of cDNA 1397[bp] (No. of exon:10)[A:426 T:386 G:331 C:254]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type testis
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1382(+) Signal: 1364-1368(+)
Vector/adapter sequence NA
Frame shift 1110-1111[bp] Deletion(TA);
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0027115
Genomic location  G-integra Help Chromosome 17
Location 17q11.2
Position 30658615- 30669184
Strand -
Possible duplicated location(s) NA
Gene structure 10 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:64149
KEGG GENES KEGG GENES(64149)
GeneCard GeneCardC17orf75*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000166473
Predicted CDS 27..1217;  396[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.709

Motif information
ORF

length(396),orf(27:1217)
MLPSLQESMDGDEKELESSEEGGSAEERRLEPPSSSHYCLYSYRGSRLAQ
QRGDSEDGSPSGTNAETPSGDDFSLSLADTNLPSEVEPELRSFIAKRLSR
GAVFEGLGNVASVELKIPGYRVGCYYCLFQNEKLLPETVTIDSERNPSEY
VVCFLGGSEKGLELFRLELDKYIQGLKNNMNCEARGLESHIKSYLSSWFE
DVVCPIQRVVLLFQEKLTFLLHAALSYTPVEVKESDEKTKRDINRFLSVA
SLQGLIHEGTMTSLCMAMTEEQHKSVVIDCSSSQPQFCNAGSNRFCEDWM
QAFLNGAKGGNPFFFRQVLENFKLKAIQDTNNLKRFIRQAEMNHYALFKC
YMFLKNCGSGDILLKIVKVEHEEMPEAKNVIAVLEEFMKEALDQSF*
a.a.
length
InterPro Name
length(354), motif(38:391) 354 IPR028280 Protein Njmu-R1 [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000076782
H-Inv cluster ID Locus viewHIX0027115
Accession number AF305686.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protein Njmu-R1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_071739)  [Identity/coverage = 99.747%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol C17orf75
HGNC aliases NA
HGNC name chromosome 17 open reading frame 75
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000166473
No. of interaction 3
Interaction partner(s) HIP000088191HIP000123867HIP000123867
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:64149
KEGG GENES KEGG GENES(64149)
GeneCard GeneCardC17orf75*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA081114; 
Affymetrix
GeneChip
HG-Focus 203830_at; 
HG-U133 203830_at; 
HG-U133A 203830_at; 
HG-U133A_2 203830_at; 
HG-U133B NA
HG-U133_Plus_2 203830_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3717634;  3752617;  3752618;  3752619;  3752620;  3752622;  3752623;  3752624;  3752626;  3752627;  3752628;  3752630;  3752631;  3752633;  3752635;  3752636; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P15639; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P15639;  A_24_P224526; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
31 .. 31 T/A rs201322517 - CDS Nonsynonymous[Leu2His]
110 .. 110 G/C rs143405256 - CDS Synonymous[Arg28Arg]
130 .. 130 G/C rs116565498 - CDS Nonsynonymous[Ser35Thr]
211 .. 211 G/A rs202086475 - CDS Nonsynonymous[Gly62Asp]
298 .. 298 G/T rs11557693 + CDS Nonsynonymous[Arg91Leu]
710 .. 710 T/C rs200381289 - CDS Synonymous[Thr228Thr]
775 .. 775 C/A rs1127742 + CDS Nonsynonymous[Ala250Asp]
818 .. 818 G/C rs182533138 - CDS Nonsynonymous[Leu264Phe]
863 .. 863 T/C rs190434891 - CDS Synonymous[Asp279Asp]
1285 .. 1285 A/G rs190347094 - 3'UTR
1339 .. 1339 C/T rs11557694 + 3'UTR
1345 .. 1345 G/T rs11557695 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer