H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000078340 Accession number: AF359418 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Seven transmembrane helix receptor precursor.
 
 

Transcript original information
Accession number AF359418.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 517[bp] (No. of exon:1)[A:101 T:176 G:100 C:140]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift 35-35[bp] Insertion(C);
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0029844
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71282672- 71283188
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000037325
Predicted CDS 1..477;  158[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.737

Motif information
ORF

length(158),orf(1:477)
MAYDRYVAICHSPHYPVIMNPRLGVFFVLVSFFLSLLDSQLHSWTVLQFT
FFKNVEISNFVCDPSQLLNLACSDSVIDSIFIYLDSTMFRFLPISGILLS
YSNIVPSILRISSSDGKSKAFSTCRSHLAVVCLFYGTGIGVYLTSAVAPP
PGVVWWCQ*
a.a.
length
InterPro Name
length(158), motif(1:158) 158 IPR017452 GPCR, rhodopsin-like, 7TM [Domain]
length(148), motif(1:148) 148 IPR017452 GPCR, rhodopsin-like, 7TM [Domain]
length(13), motif(12:24) 13 IPR000725 Olfactory receptor [Family]
length(17), motif(59:75) 17 IPR000725 Olfactory receptor [Family]
length(10), motif(119:128) 10 IPR000725 Olfactory receptor [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000078340
H-Inv cluster ID Locus viewHIX0029844
Accession number AF359418.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Similar to Seven transmembrane helix receptor precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001035160)  [Identity/coverage = 81.061%/61.11%] to Homo sapiens protein.
Experimental evidence Expression evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000037325
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function olfactory receptor activity (GO:0004984); 
Biological process G-protein coupled receptor protein signaling pathway (GO:0007186); 
Cellular component integral to membrane (GO:0016021); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  plasma membrane; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 215770_at; 
HG-U133A 215770_at; 
HG-U133A_2 215770_at; 
HG-U133B NA
HG-U133_Plus_2 215770_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2488026;  2488035;  2488037; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P128727; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Pan sp. (Chimpanzee) XR_023703 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
9 .. 9 T/C rs185729024 + CDS Synonymous[Tyr3Tyr]
20 .. 20 T/C rs190550140 + CDS Nonsynonymous[Val7Ala]
25 .. 25 A/G rs1833352 - CDS Nonsynonymous[Ile9Val]
240 .. 240 A/T rs181591131 + CDS Synonymous[Ile80Ile]
243 .. 243 C/G rs113765635 + CDS Nonsynonymous[Phe81Leu]
246 .. 246 A/G rs72485375 + CDS Nonsynonymous[Ile82Met]
269 .. 269 G/A rs11885237 + CDS Nonsynonymous[Arg90His]
278 .. 278 C/T rs184654267 + CDS Nonsynonymous[Pro93Leu]
292 .. 292 C/T rs202237148 + CDS Nonsynonymous[Leu98Phe]
346 .. 346 G/T rs72485376 + CDS Nonsynonymous[Gly116Trp]
420 .. 420 C/T rs139521576 + CDS Synonymous[Gly140Gly]
451 ^ 452 -/T rs35074164 + CDS
455 .. 455 G/A rs149681147 + CDS Nonsynonymous[Gly152Glu]
457 .. 457 G/A rs34797997 + CDS Nonsynonymous[Val153Met]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer