H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000085886
Accession number:
BC000821
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC000821.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:3453993
Experimental resources
NBRC
;
HGPD
;
Antibody (RNF187)
;
Catalog (RNF187)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
773[bp] (No. of exon:1)[A:158 T:191 G:209 C:215]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Placenta, choriocarcinoma
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 755(+) Signal: 736-740(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GTCATCCAGGGACCCAGACCCTGCACCTTCCATGTGGGCCCACAGATCCT TGGCAGGTACCTGAGGTGCACCATTGAGTGTCGGATTTGGGGTTAGCATC CAGAAAGAAGAATGCGCATGACGCTCTGTGAAGGCTGGAACTCAGGTCTT CAGGGAGAGAAAGGAAGACTGGATTGCACCTTGATGCCTCCTGAGGAGGC GGCCCCCCTCTTGAGGTGGGCGTGGGCCCGGCCCAGCCTTATCCAAGTCG CTCTGTCCACCTCCCCCTTCCTGGCCCCCACCCCACTCCTGTGCCTCCCA GGAGCCCTCCCTGTGCTCCACCTGCCTCCGCAGAAGGAAGCCTCTTTCTC TGTTTCCCTGGGTGAGGGGGCTGGCAGGTGGCTAACCCCATTTAGCATCT CCAGGCCCTGCCATGGTGTCTCATCTTGCTGTTATCTCTAGCTCTTTCCC TCCTCCCATTTCCTTTAGTAGTTGAATTTTGCAAAGCTTGTAGCAGTAGC TCAGTTGCCTGCAGCATCCTTGTGTGTAGATAAATTAGTCGACAGAAACT CAGCACTGGGGACAGGATTGCAAAGTCGGGGACATAGATGCAGACAGTTG TTGAGATTTGGGGATAGCCGGGCTTGTGAGCGGTGCCCATTTCCAGATGA AGCCTTTCAGCCCTTCTGAGTCCCCGGCCCTTGGTGCGATGTCTGTGAGT TTGACCTGCCCAGCGTGTGGGCTGGCTCAATGCTGAATAAAGTGGGTTTG TGTCAAAAAAAAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0028697
Genomic location
Chromosome
1
Location
1q42.13
Position
228681916- 228682670
Strand
+
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:149603
;
KEGG GENES
KEGG GENES(149603)
;
GeneCard
RNF187
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000093237
Predicted CDS
112..441; 109[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.757
MRMTLCEGWNSGLQGEKGRLDCTLMPPEEAAPLLRWAWARPSLIQVALST SPFLAPTPLLCLPGALPVLHLPPQKEASFSVSLGEGAGRWLTPFSISRPC HGVSSCCYL*
Gene function information
H-Inv ID
HIT000085886
H-Inv cluster ID
HIX0028697
Accession number
BC000821.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
RNF187
HGNC aliases
NA
HGNC name
ring finger protein 187
DDBJ
RNF187
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000093237
No. of interaction
6
Interaction partner(s)
HIP000032401
;
HIP000032401
;
HIP000088988
;
HIP000088988
;
HIP000253085
;
HIP000253085
;
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:149603
;
KEGG GENES
KEGG GENES(149603)
;
GeneCard
RNF187
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; nuclear; cytosol; Other;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB191110;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
212155_at;
HG-U133A
212155_at;
HG-U133A_2
212155_at;
HG-U133B
NA
HG-U133_Plus_2
212155_at;
HG-U95
39722_at;
HG-U95A
39722_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2384327; 2459623;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_24_P23995;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
284 .. 284
C/A
rs140641641
+
CDS
Nonsynonymous[Pro58Gln]
415 .. 415
G/C
rs12542
-
CDS
Nonsynonymous[Gly102Arg]
542 .. 542
A/T
rs192212622
+
3'UTR
555 .. 555
A/C
rs1046390
+
3'UTR
620 .. 620
G/A
rs11547452
+
3'UTR
666 .. 666
C/T
rs1046450
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;