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H-Invitational ID: HIT000088319 Accession number: BC014202 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to DNA replication factor Cdt1; Double parked homolog; DUP;
 
 

Transcript original information
Accession number BC014202.2
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:4564788
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (CDT1) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (CDT1);
Sequence data provider NA
Annotation project NA
Length of cDNA 1213[bp] (No. of exon:6)[A:240 T:199 G:373 C:401]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Kidney, renal cell adenocarcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1188(+) Signal: 1167-1171(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0013345
Genomic location  G-integra Help Chromosome 16
Location 16q24.3
Position 88872131- 88874918
Strand +
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81620
KEGG GENES KEGG GENES(81620)
GeneCard GeneCardCDT1*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000124015
Predicted CDS 3..956;  317[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.834

Motif information
ORF

length(317),orf(3:956)
RFEERNVGQIKTVYPASYRFRQERSVPTFKDGARRSDYQLTIEPLLEQEA
DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLT
RWHPRFNVDEVPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKAL
SQLALRSAAPSSPGSPRPALPATPPATPPAASPSALKGVSQDLLERIRAK
EAQKQLAQMTRCPEQEQRLQRLERLPELARVLRSVFVSERKPALSMEVAC
ARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAADL
AHITARLAHQTRAEEGL*
a.a.
length
InterPro Name
length(121), motif(1:121) 121 IPR014939 CDT1 Geminin-binding domain-like [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000088319
H-Inv cluster ID Locus viewHIX0013345
Accession number BC014202.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to DNA replication factor Cdt1; Double parked homolog; DUP;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9H211)  [Identity/coverage = 99.369%/58.06%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 10766248111251461467293214993212152572901548933415616553168619061694936717085480186696481969033221358631213586322154333221856198ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol CDT1
HGNC aliases NA
HGNC name chromatin licensing and DNA replication factor 1
DDBJ CDT1
UniProt CDT1
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000124015
No. of interaction 1
Interaction partner(s) HIP000307290
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81620
KEGG GENES KEGG GENES(81620)
GeneCard GeneCardCDT1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
3 32 1wlqC 4e-09 93.3 30/185 a.4.5.52
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB101010; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 209832_s_at; 
HG-U133A 209832_s_at; 
HG-U133A_2 209832_s_at; 
HG-U133B NA
HG-U133_Plus_2 209832_s_at; 
HG-U95 34510_at; 
HG-U95A 34510_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3673696;  3673697;  3673699;  3673700;  3673702;  3673704;  3673705;  3673706;  3673707; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P37704; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P37704;  A_24_P176374; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
15 .. 15 C/G/T rs507329 + CDS
37 .. 37 C/T rs145904773 + CDS Nonsynonymous[Thr12Ile]
46 .. 46 C/T rs145319641 + CDS Nonsynonymous[Pro15Leu]
53 .. 53 C/T rs200892812 + CDS Synonymous[Ser17Ser]
57 .. 57 C/T rs149192605 + CDS Nonsynonymous[Arg19Cys]
63 .. 63 C/T rs199723040 + CDS Nonsynonymous[Arg21Cys]
72 .. 72 C/T rs143284523 + CDS Nonsynonymous[Arg24Cys]
73 .. 73 G/A rs148337159 + CDS Nonsynonymous[Arg24His]
83 .. 83 C/T rs201965856 + CDS Synonymous[Pro27Pro]
99 .. 99 G/A rs480727 + CDS Nonsynonymous[Ala33Thr]
120 .. 120 C/T rs147045046 + CDS Nonsynonymous[Leu40Phe]
159 .. 159 G/A rs138308928 + CDS Nonsynonymous[Ala53Thr]
170 .. 170 G/A rs142859474 + CDS Synonymous[Gln56Gln]
183 .. 183 C/T rs200820843 + CDS Nonsynonymous[Arg61Cys]
185 .. 185 C/T rs147431304 + CDS Synonymous[Arg61Arg]
198 .. 198 C/T rs139127078 + CDS Nonsynonymous[Arg66Trp]
199 .. 199 G/T rs149521649 + CDS Nonsynonymous[Arg66Leu]
200 .. 200 G/T rs143950630 + CDS Synonymous[Arg66Arg]
203 .. 203 G/A rs148645974 + CDS Synonymous[Gln67Gln]
215 .. 215 G/C rs143149360 + CDS Nonsynonymous[Gln71His]
230 .. 230 C/T rs510862 + CDS Synonymous[His76His]
249 .. 249 G/A rs200373131 + CDS Nonsynonymous[Ala83Thr]
273 .. 273 G/A rs139116876 + CDS Nonsynonymous[Ala91Thr]
276 .. 276 A/G rs144458606 + CDS Nonsynonymous[Met92Val]
278 .. 278 G/A rs151127192 + CDS Nonsynonymous[Met92Ile]
301 .. 301 C/T rs141042249 + CDS Nonsynonymous[Thr100Ile]
313 .. 313 C/T rs150252167 + CDS Nonsynonymous[Pro104Leu]
314 .. 314 G/A rs202026460 + CDS Synonymous[Pro104Pro]
317 .. 317 C/T rs201613709 + CDS Synonymous[Arg105Arg]
324 .. 324 G/A rs145752768 + CDS Nonsynonymous[Val108Met]
338 .. 338 C/T rs200497384 + CDS Synonymous[Pro112Pro]
349 .. 349 C/T rs141611072 + CDS Nonsynonymous[Pro116Leu]
457 .. 457 A/G rs200300950 + CDS Nonsynonymous[Gln152Arg]
458 .. 458 A/G rs147067524 + CDS Synonymous[Gln152Gln]
459 .. 459 T/C rs138244244 + CDS Synonymous[Leu153Leu]
469 .. 469 G/A rs143840572 + CDS Nonsynonymous[Arg156His]
491 .. 491 C/T rs143599393 + CDS Synonymous[Pro163Pro]
494 .. 494 G/C rs74035837 + CDS Synonymous[Gly164Gly]
498 .. 498 C/T rs141725211 + CDS Nonsynonymous[Pro166Ser]
500 .. 500 C/T rs150572251 + CDS Synonymous[Pro166Pro]
515 .. 515 G/A rs200169074 + CDS Synonymous[Pro171Pro]
516 .. 516 G/A rs139927650 + CDS Nonsynonymous[Ala172Thr]
522 .. 522 C/T rs199674701 + CDS Nonsynonymous[Pro174Ser]
536 .. 536 G/A rs74035838 + CDS Synonymous[Pro178Pro]
606 .. 606 G/A rs146214741 + CDS Nonsynonymous[Ala202Thr]
640 .. 640 C/T rs200199040 + CDS Nonsynonymous[Pro213Leu]
663 .. 663 C/T rs139052420 + CDS Nonsynonymous[Arg221Cys]
672 .. 672 C/T rs200672589 + CDS Nonsynonymous[Arg224Trp]
682 .. 682 A/C rs3218729 + CDS Nonsynonymous[Glu227Ala]
688 .. 688 C/T rs145394645 + CDS Nonsynonymous[Ala229Val]
692 .. 692 C/G/T rs3218730 + CDS
704 .. 704 C/T rs142465113 + CDS Synonymous[Ser234Ser]
716 .. 716 C/G/T rs151292317 + CDS
717 .. 717 G/A rs200652608 + CDS Nonsynonymous[Glu239Lys]
720 .. 720 C/T rs141750196 + CDS Nonsynonymous[Arg240Cys]
726 .. 726 C/G rs141663679 + CDS Nonsynonymous[Pro242Ala]
730 .. 730 C/T rs202071237 + CDS Nonsynonymous[Ala243Val]
784 .. 784 T/C rs147704737 + CDS Nonsynonymous[Met261Thr]
787 .. 787 G/A rs146199695 + CDS Nonsynonymous[Ser262Asn]
815 .. 815 G/T rs3218720 + CDS Synonymous[Leu271Leu]
822 .. 822 T/G rs147828044 + CDS Nonsynonymous[Ser274Ala]
836 .. 836 G/A rs139633564 + CDS Synonymous[Pro278Pro]
861 .. 861 C/T rs144721725 + CDS Nonsynonymous[Arg287Cys]
862 .. 862 G/A rs138633544 + CDS Nonsynonymous[Arg287His]
875 .. 875 C/T rs147914553 + CDS Synonymous[Tyr291Tyr]
893 .. 893 C/T rs141757329 + CDS Synonymous[Ala297Ala]
896 .. 896 G/A rs77893539 + CDS Synonymous[Ala298Ala]
902 .. 902 G/C rs572275 + CDS Synonymous[Leu300Leu]
904 .. 904 C/A rs141620875 + CDS Nonsynonymous[Ala301Asp]
916 .. 916 C/T rs186133926 + CDS Nonsynonymous[Ala305Val]
919 .. 919 G/A rs75595603 + CDS Nonsynonymous[Arg306His]
925 .. 925 C/T rs3218721 + CDS Nonsynonymous[Ala308Val]
944 .. 944 G/A rs141644149 + CDS Synonymous[Glu314Glu]
946 .. 946 A/T rs144843732 + CDS Nonsynonymous[Glu315Val]
962 .. 962 G/C rs3218723 + 3'UTR
966 .. 966 C/T rs11548244 + 3'UTR
981 .. 981 G/A rs80302516 + 3'UTR
997 .. 997 C/T rs78831570 + 3'UTR
999 .. 999 C/G rs3743548 - 3'UTR
1014 .. 1014 C/T rs112314329 + 3'UTR
1048 .. 1048 T/C rs15829 + 3'UTR
1052 .. 1052 C/G rs189620919 + 3'UTR
1058 .. 1058 C/G rs183396627 + 3'UTR
1086 .. 1086 T/G rs112876071 + 3'UTR
1114 .. 1114 G/A rs150410264 + 3'UTR
1157 .. 1157 G/A rs1799825 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer