H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000088319
Accession number:
BC014202
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to DNA replication factor Cdt1; Double parked homolog; DUP;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC014202.2
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:4564788
Experimental resources
NBRC
;
HGPD
;
Antibody (CDT1)
;
Catalog (CDT1)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1213[bp] (No. of exon:6)[A:240 T:199 G:373 C:401]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Kidney, renal cell adenocarcinoma
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 1188(+) Signal: 1167-1171(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGCGTTTTGAGGAGCGCAATGTTGGCCAGATCAAAACCGTGTACCCGGCC TCCTACCGCTTCCGCCAGGAGCGCAGTGTCCCCACCTTCAAGGATGGCGC CAGGAGGTCAGATTACCAGCTCACCATCGAGCCACTGCTGGAGCAGGAGG CTGACGGAGCAGCCCCCCAGCTCACGGCCTCGCGCCTCCTGCAGCGACGG CAGATCTTCAGCCAGAAGCTGGTGGAGCACGTCAAGGAGCACCACAAGGC CTTCCTGGCCTCCCTGAGCCCCGCCATGGTGGTGCCGGAGGACCAGCTGA CCCGCTGGCACCCGCGCTTCAACGTGGATGAAGTACCCGACATCGAGCCG GCCGCGCTGCCCCAGCCACCCGCCACGGAGAAGCTCACCACTGCTCAGGA GGTGCTGGCCCGGGCCCGCAACCTGATTTCACCCAGGATGGAGAAGGCCT TGAGTCAATTGGCCCTGCGCTCTGCTGCGCCCAGCAGCCCCGGGTCTCCC AGGCCAGCACTGCCGGCTACCCCACCAGCCACCCCGCCTGCAGCCTCTCC CAGTGCTCTGAAGGGGGTGTCCCAGGATCTGCTGGAGCGGATCCGAGCCA AGGAGGCACAGAAGCAGCTGGCACAGATGACGCGGTGCCCGGAGCAGGAG CAGCGGCTGCAGCGCTTAGAACGGCTGCCTGAGCTGGCCCGCGTGCTGCG GAGCGTCTTTGTGTCCGAACGCAAGCCTGCGCTCAGCATGGAGGTGGCCT GTGCCAGGATGGTGGGCAGCTGTTGTACTATCATGAGCCCTGGGGAAATG GAGAAGCACCTGCTGCTCCTCTCCGAGCTGCTGCCGGACTGGCTCAGCCT CCACCGCATCCGCACCGACACCTACGTCAAGCTGGACAAGGCCGCGGACC TGGCCCACATCACTGCACGCCTGGCCCACCAGACACGTGCTGAGGAGGGG CTGTGAGCCTGGGGGCCACTGTGGACAGACGTGGGCTTCAGAAGCTCGCT GGCCTGGGCCCACCAGCATTTTCTTTTATGAACATGATACACTTTGGTCT TCCTTTCCCCAGCGCCCCTGAGGGCCAGAGGCAGATGTGGGCTGCAGGCT GCACAGCCCGAGGGTCTCTGGCTGCGGGCGGTGGGCCCCTTCATGGGGCT CACCTGGTGGATTCACATTAAACCGGTTTCTGTGGGCAAAAAAAAAAAAA AAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0013345
Genomic location
Chromosome
16
Location
16q24.3
Position
88872131- 88874918
Strand
+
Possible duplicated location(s)
NA
Gene structure
6 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81620
;
KEGG GENES
KEGG GENES(81620)
;
GeneCard
CDT1
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000124015
Predicted CDS
3..956; 317[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.834
RFEERNVGQIKTVYPASYRFRQERSVPTFKDGARRSDYQLTIEPLLEQEA DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLT RWHPRFNVDEVPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKAL SQLALRSAAPSSPGSPRPALPATPPATPPAASPSALKGVSQDLLERIRAK EAQKQLAQMTRCPEQEQRLQRLERLPELARVLRSVFVSERKPALSMEVAC ARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAADL AHITARLAHQTRAEEGL*
Motif information
a.a.
length
InterPro
Name
121
IPR014939
CDT1 Geminin-binding domain-like [Domain]
Gene function information
H-Inv ID
HIT000088319
H-Inv cluster ID
HIX0013345
Accession number
BC014202.2
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to DNA replication factor Cdt1; Double parked homolog; DUP;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9H211
) [Identity/coverage = 99.369%/58.06%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
10766248
;
11125146
;
14672932
;
14993212
;
15257290
;
15489334
;
15616553
;
16861906
;
16949367
;
17085480
;
18669648
;
19690332
;
21358631
;
21358632
;
21543332
;
21856198
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
CDT1
HGNC aliases
NA
HGNC name
chromatin licensing and DNA replication factor 1
DDBJ
CDT1
UniProt
CDT1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000124015
No. of interaction
1
Interaction partner(s)
HIP000307290
;
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81620
;
KEGG GENES
KEGG GENES(81620)
;
GeneCard
CDT1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; nuclear;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
3
32
1wlqC
4e-09
93.3
30/185
a.4.5.52
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB101010;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
209832_s_at;
HG-U133A
209832_s_at;
HG-U133A_2
209832_s_at;
HG-U133B
NA
HG-U133_Plus_2
209832_s_at;
HG-U95
34510_at;
HG-U95A
34510_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3673696; 3673697; 3673699; 3673700; 3673702; 3673704; 3673705; 3673706; 3673707;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P37704;
Whole Human Genome Oligo Microarray:PGID247
A_23_P37704; A_24_P176374;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
15 .. 15
C/G/T
rs507329
+
CDS
37 .. 37
C/T
rs145904773
+
CDS
Nonsynonymous[Thr12Ile]
46 .. 46
C/T
rs145319641
+
CDS
Nonsynonymous[Pro15Leu]
53 .. 53
C/T
rs200892812
+
CDS
Synonymous[Ser17Ser]
57 .. 57
C/T
rs149192605
+
CDS
Nonsynonymous[Arg19Cys]
63 .. 63
C/T
rs199723040
+
CDS
Nonsynonymous[Arg21Cys]
72 .. 72
C/T
rs143284523
+
CDS
Nonsynonymous[Arg24Cys]
73 .. 73
G/A
rs148337159
+
CDS
Nonsynonymous[Arg24His]
83 .. 83
C/T
rs201965856
+
CDS
Synonymous[Pro27Pro]
99 .. 99
G/A
rs480727
+
CDS
Nonsynonymous[Ala33Thr]
120 .. 120
C/T
rs147045046
+
CDS
Nonsynonymous[Leu40Phe]
159 .. 159
G/A
rs138308928
+
CDS
Nonsynonymous[Ala53Thr]
170 .. 170
G/A
rs142859474
+
CDS
Synonymous[Gln56Gln]
183 .. 183
C/T
rs200820843
+
CDS
Nonsynonymous[Arg61Cys]
185 .. 185
C/T
rs147431304
+
CDS
Synonymous[Arg61Arg]
198 .. 198
C/T
rs139127078
+
CDS
Nonsynonymous[Arg66Trp]
199 .. 199
G/T
rs149521649
+
CDS
Nonsynonymous[Arg66Leu]
200 .. 200
G/T
rs143950630
+
CDS
Synonymous[Arg66Arg]
203 .. 203
G/A
rs148645974
+
CDS
Synonymous[Gln67Gln]
215 .. 215
G/C
rs143149360
+
CDS
Nonsynonymous[Gln71His]
230 .. 230
C/T
rs510862
+
CDS
Synonymous[His76His]
249 .. 249
G/A
rs200373131
+
CDS
Nonsynonymous[Ala83Thr]
273 .. 273
G/A
rs139116876
+
CDS
Nonsynonymous[Ala91Thr]
276 .. 276
A/G
rs144458606
+
CDS
Nonsynonymous[Met92Val]
278 .. 278
G/A
rs151127192
+
CDS
Nonsynonymous[Met92Ile]
301 .. 301
C/T
rs141042249
+
CDS
Nonsynonymous[Thr100Ile]
313 .. 313
C/T
rs150252167
+
CDS
Nonsynonymous[Pro104Leu]
314 .. 314
G/A
rs202026460
+
CDS
Synonymous[Pro104Pro]
317 .. 317
C/T
rs201613709
+
CDS
Synonymous[Arg105Arg]
324 .. 324
G/A
rs145752768
+
CDS
Nonsynonymous[Val108Met]
338 .. 338
C/T
rs200497384
+
CDS
Synonymous[Pro112Pro]
349 .. 349
C/T
rs141611072
+
CDS
Nonsynonymous[Pro116Leu]
457 .. 457
A/G
rs200300950
+
CDS
Nonsynonymous[Gln152Arg]
458 .. 458
A/G
rs147067524
+
CDS
Synonymous[Gln152Gln]
459 .. 459
T/C
rs138244244
+
CDS
Synonymous[Leu153Leu]
469 .. 469
G/A
rs143840572
+
CDS
Nonsynonymous[Arg156His]
491 .. 491
C/T
rs143599393
+
CDS
Synonymous[Pro163Pro]
494 .. 494
G/C
rs74035837
+
CDS
Synonymous[Gly164Gly]
498 .. 498
C/T
rs141725211
+
CDS
Nonsynonymous[Pro166Ser]
500 .. 500
C/T
rs150572251
+
CDS
Synonymous[Pro166Pro]
515 .. 515
G/A
rs200169074
+
CDS
Synonymous[Pro171Pro]
516 .. 516
G/A
rs139927650
+
CDS
Nonsynonymous[Ala172Thr]
522 .. 522
C/T
rs199674701
+
CDS
Nonsynonymous[Pro174Ser]
536 .. 536
G/A
rs74035838
+
CDS
Synonymous[Pro178Pro]
606 .. 606
G/A
rs146214741
+
CDS
Nonsynonymous[Ala202Thr]
640 .. 640
C/T
rs200199040
+
CDS
Nonsynonymous[Pro213Leu]
663 .. 663
C/T
rs139052420
+
CDS
Nonsynonymous[Arg221Cys]
672 .. 672
C/T
rs200672589
+
CDS
Nonsynonymous[Arg224Trp]
682 .. 682
A/C
rs3218729
+
CDS
Nonsynonymous[Glu227Ala]
688 .. 688
C/T
rs145394645
+
CDS
Nonsynonymous[Ala229Val]
692 .. 692
C/G/T
rs3218730
+
CDS
704 .. 704
C/T
rs142465113
+
CDS
Synonymous[Ser234Ser]
716 .. 716
C/G/T
rs151292317
+
CDS
717 .. 717
G/A
rs200652608
+
CDS
Nonsynonymous[Glu239Lys]
720 .. 720
C/T
rs141750196
+
CDS
Nonsynonymous[Arg240Cys]
726 .. 726
C/G
rs141663679
+
CDS
Nonsynonymous[Pro242Ala]
730 .. 730
C/T
rs202071237
+
CDS
Nonsynonymous[Ala243Val]
784 .. 784
T/C
rs147704737
+
CDS
Nonsynonymous[Met261Thr]
787 .. 787
G/A
rs146199695
+
CDS
Nonsynonymous[Ser262Asn]
815 .. 815
G/T
rs3218720
+
CDS
Synonymous[Leu271Leu]
822 .. 822
T/G
rs147828044
+
CDS
Nonsynonymous[Ser274Ala]
836 .. 836
G/A
rs139633564
+
CDS
Synonymous[Pro278Pro]
861 .. 861
C/T
rs144721725
+
CDS
Nonsynonymous[Arg287Cys]
862 .. 862
G/A
rs138633544
+
CDS
Nonsynonymous[Arg287His]
875 .. 875
C/T
rs147914553
+
CDS
Synonymous[Tyr291Tyr]
893 .. 893
C/T
rs141757329
+
CDS
Synonymous[Ala297Ala]
896 .. 896
G/A
rs77893539
+
CDS
Synonymous[Ala298Ala]
902 .. 902
G/C
rs572275
+
CDS
Synonymous[Leu300Leu]
904 .. 904
C/A
rs141620875
+
CDS
Nonsynonymous[Ala301Asp]
916 .. 916
C/T
rs186133926
+
CDS
Nonsynonymous[Ala305Val]
919 .. 919
G/A
rs75595603
+
CDS
Nonsynonymous[Arg306His]
925 .. 925
C/T
rs3218721
+
CDS
Nonsynonymous[Ala308Val]
944 .. 944
G/A
rs141644149
+
CDS
Synonymous[Glu314Glu]
946 .. 946
A/T
rs144843732
+
CDS
Nonsynonymous[Glu315Val]
962 .. 962
G/C
rs3218723
+
3'UTR
966 .. 966
C/T
rs11548244
+
3'UTR
981 .. 981
G/A
rs80302516
+
3'UTR
997 .. 997
C/T
rs78831570
+
3'UTR
999 .. 999
C/G
rs3743548
-
3'UTR
1014 .. 1014
C/T
rs112314329
+
3'UTR
1048 .. 1048
T/C
rs15829
+
3'UTR
1052 .. 1052
C/G
rs189620919
+
3'UTR
1058 .. 1058
C/G
rs183396627
+
3'UTR
1086 .. 1086
T/G
rs112876071
+
3'UTR
1114 .. 1114
G/A
rs150410264
+
3'UTR
1157 .. 1157
G/A
rs1799825
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;