H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000093073 Accession number: BC033372 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protein AHNAK2.
 
 

Transcript original information
Accession number BC033372.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:4749202
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (AHNAK2) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (AHNAK2);
Sequence data provider NA
Annotation project NA
Length of cDNA 1948[bp] (No. of exon:1)[A:571 T:427 G:468 C:482]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Skin, squamous cell carcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1926(+) Signal: 1904-1908(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0012023
Genomic location  G-integra Help Chromosome 14
Location 14q32.33
Position 105403590- 105405515
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:113146
KEGG GENES KEGG GENES(113146)
GeneCard GeneCardAHNAK2*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000003314
Predicted CDS 1..1116;  371[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.751

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000093073
H-Inv cluster ID Locus viewHIX0012023
Accession number BC033372.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protein AHNAK2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_612429)  [Identity/coverage = 100.0%/6.4%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol AHNAK2
HGNC aliases "chromosome 14 open reading frame 78"
HGNC name AHNAK nucleoprotein 2
DDBJ AHNAK2
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000003314
No. of interaction 1
Interaction partner(s) HIP000358740
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:113146
KEGG GENES KEGG GENES(113146)
GeneCard GeneCardAHNAK2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB131508; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212992_at; 
HG-U133A 212992_at; 
HG-U133A_2 212992_at; 
HG-U133B NA
HG-U133_Plus_2 212992_at; 
HG-U95 36497_at; 
HG-U95A 36497_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3581222;  3581223;  3581224;  3581225;  3581226;  3581227;  3581228;  3581229; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_23_P311912;  A_24_P273253; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
82 .. 82 A/T rs202009876 - CDS Nonsynonymous[Asn28Tyr]
229 .. 229 G/A rs201885720 - CDS Nonsynonymous[Val77Met]
233 .. 233 G/T rs200811905 - CDS Nonsynonymous[Arg78Leu]
273 .. 273 G/A rs200712744 - CDS Synonymous[Ser91Ser]
317 .. 317 C/T rs140424316 - CDS Nonsynonymous[Thr106Met]
339 .. 339 A/G rs201311821 - CDS Synonymous[Thr113Thr]
346 .. 346 C/T rs150553508 - CDS AA-STOP[Gln116*]
357 .. 357 G/A rs185956574 - CDS Synonymous[Arg119Arg]
423 .. 423 T/C rs181079678 - CDS Synonymous[Asp141Asp]
426 .. 426 C/T rs141727495 - CDS Synonymous[Leu142Leu]
440 .. 440 G/C rs148041593 - CDS Nonsynonymous[Gly147Ala]
474 .. 474 T/C rs201233696 - CDS Synonymous[Asn158Asn]
482 .. 482 G/A rs112240235 - CDS Nonsynonymous[Gly161Glu]
540 .. 540 A/G rs188591246 - CDS Synonymous[Ser180Ser]
572 .. 572 C/T rs199650197 - CDS Nonsynonymous[Pro191Leu]
632 .. 632 A/G rs143601583 - CDS Nonsynonymous[Asp211Gly]
656 .. 656 G/T rs200328056 - CDS Nonsynonymous[Gly219Val]
661 .. 661 C/T rs184901284 - CDS Nonsynonymous[Leu221Phe]
772 .. 772 C/T rs180897730 - CDS AA-STOP[Arg258*]
828 .. 828 C/T rs189347459 - CDS Synonymous[Pro276Pro]
923 .. 923 C/G/T rs748358 + CDS
946 .. 946 T/C rs201298192 - CDS Nonsynonymous[Phe316Leu]
982 .. 982 G/A rs80245452 - CDS Nonsynonymous[Gly328Arg]
1053 .. 1053 C/T rs201939750 - CDS Synonymous[Pro351Pro]
1112 .. 1112 G/C rs201189960 - CDS Nonsynonymous[Gly371Ala]
1120 .. 1120 G/C rs141898708 - 3'UTR
1131 .. 1131 C/T rs78726317 - 3'UTR
1132 .. 1132 G/A rs1048257 + 3'UTR
1234 .. 1234 C/T rs138792829 - 3'UTR
1273 .. 1273 C/G rs144991997 - 3'UTR
1332 .. 1332 G/A rs185589455 - 3'UTR
1422 .. 1422 A/G rs193118009 - 3'UTR
1502 .. 1502 C/T rs79161962 - 3'UTR
1508 .. 1508 G/A rs188930441 - 3'UTR
1605 .. 1605 C/G rs141284836 - 3'UTR
1649 .. 1649 C/G rs3742936 + 3'UTR
1679 .. 1679 A/G rs117240735 - 3'UTR
1729 .. 1729 A/G rs11548712 - 3'UTR
1792 .. 1792 C/T rs191622428 - 3'UTR
1816 .. 1816 G/A rs187138744 - 3'UTR
1839 .. 1839 T/C rs117884483 - 3'UTR
1878 .. 1878 C/T rs183172856 - 3'UTR
1905 .. 1905 A/G rs145238396 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer