H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
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Chromosome number
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Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
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FR Accession number
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GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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H-Invitational ID:
HIT000094334
Accession number:
BC036280
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Breast carcinoma-amplified sequence 3 isoform 2.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC036280.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:3917955
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
2108[bp] (No. of exon:4)[A:489 T:467 G:551 C:601]
Devision
HTC
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Skin, melanotic melanoma.
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 2094(+) Signal: 2068-2072(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GATCTCGTGAGAACCAACTCACTAAAACAAGAACAGGATGGGGAAACTGC CCCCATGATTCAATTATCTCCACCTGGTCCCTCCCAGGACACATGGGGAT TATGGGAACTACAAGTCAAGATGAGATTTGGGTGGAGACACAGCCAAACG ATATCAGGGTGTTGTGAGGATTCATGGAGCAAATGGCTGTGAAAGCACCT TGTAAAGGGTAGAGCAGTGTGCGGCGTGAGGGATTATTATCATTGTTAAG ACGTCTACGCCTCGTTGCTCACCCTGTGTGATCCTGCAGCTTCTCAACTT TTCCCTCCTTTCTCCCTGGTTTCCACGCCTGGGCTGCTGAGTCAGGCGGA CCGGCCAAGGCTGGCGAGGGCTGAACAGATGCTCTGACATGTCAAGGCAG GAAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTGGAACAGGCTCC GAACACACTTTGTGTGATAAATTCTAGTAACGCCAGGCTGAGCTCTACCT CCACCCCCTTAGGCTGCAAGACTAGGACATGAGGCTGAAAGTCAGAGAAG TCCCTGTGAGACGAGGGCCCTGAGCAAGCACTGGCCAGACTGTAGCAAGG CCACTCACCAGGCCACCCCGCTGGTTCTACTTCCGCACCCACCTCTGGCA GCCATGATGCTTCTGCAGCATGCCAGTTTGTTCACTGAGACCTTCACAGA AGGTCGCACAACCACCCTGGACGGTGAGAAACTAAGGTGACTGAGGCAAG TCATTGAACCACCCTGAGCCTTGGCTTCCTCATCTATGAAATGGAGTTGA CAGCATCTGTCCTGCCTGTGGTAAAAATTGCTGTGATCCCACAACCAAAA GGAAAGAGAGAATTATGAGAAAAATATGTACTTATTCTGTGAAAATATGT GAGATTTTCATGAGAGACTTCCTGTTCCAGTGGACTCTTCCACCGCCCTT GAGTGGGGAACATCCAGGCCTTCACACTCACGCTCAGCCCATCACCCCTC TGTGCAAGGTGCAAGGTCCTCTGCCCACCTGAAGCCTCAAGGCCTGATGG AAACCATCCACAGCCACTCTAGTACCTTTGACAGGAGCGTGACCCTGCTG GAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTC CATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGG CCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAGAACTTCAGCGA GAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAG CATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGA GCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAGGTACCAGCAACC TGCTTCTGACTGGCCAGCCCCCTCCCCTGCTGGAGGAGGGGAGAAGCCCC GCTCTGGTCCTACCCTTCAGTCTCTGCTCTTCCTTCATCAACCACCTTCC CCAAGCTTAGTGACAGCAGCCGCCCATCCTACCTGGATGGAGAAGAGACC CTTCTCCAAGCACCTCAGCGCACTTGCCCTCTGCCACACCTGTCGGTGGA GGCTGTGGCCAGGAGAGACTGTAGAAGCTCGGTCCCTGTGTATGTTTGCA TATGACATCCTGCATTGGATCCGCTTTTGTATTTTTTAACCATACCCACG GTGGGGCGGGTGGGGGGAGCCTGGAACAGTGACCAGATCTGGGGGCCTGA GTGGGGACAGAGTTGATCGTCCACCTGGCCATTTTGACCCTGAGTGGACA GTCACAGCCTCAGCTCATGTCTGGCTGTGACACACACTGCCCCCAGCTTC CCTTGGTCAGCCCCACTCCAGCACGGGGTGAACGGAGGCCCAGAGTACTA GGGAAGGAGGAAGGGAGGACATGCCTCTTCTTCCTCCTTTCTTTCCCCAT CTGTTCCTGGGAAGAGTTTGTCTTTCTTATCTTTAAGCCCCTTTACCCTG GTCCTGTACTGATCAGTGAAGGAAACCGTGGTTACTGAGGCCCTGTTGAA AAGTGCACGTCTTGTCCAATAAATCACGCTGCAGTTGGTGTCCAAAAAAA AAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0224086
Genomic location
Chromosome
17
Location
17q23.2
Position
59322577- 59470192
Strand
+
Possible duplicated location(s)
NA
Gene structure
4 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54828
;
KEGG GENES
KEGG GENES(54828)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000004157
Predicted CDS
903..1388; 161[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.821
DFHERLPVPVDSSTALEWGTSRPSHSRSAHHPSVQGARSSAHLKPQGLME TIHSHSSTFDRSVTLLEVCGSWPEGFGLRHMSSMEHTEEGLRERLADAMA ESPSRDVVGSGTELQREGSIETLSNSSGSTSGSIPRNFDGYRSPLPTNES QPLSLFPTGFP*
Gene function information
H-Inv ID
HIT000094334
H-Inv cluster ID
HIX0224086
Accession number
BC036280.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Breast carcinoma-amplified sequence 3 isoform 2.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_060149
) [Identity/coverage = 92.241%/12.71%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000004157
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54828
;
KEGG GENES
KEGG GENES(54828)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear; cytosol;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA260914;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
220488_s_at;
HG-U133A
220488_s_at;
HG-U133A_2
220488_s_at;
HG-U133B
NA
HG-U133_Plus_2
220488_s_at;
HG-U95
54035_at;
HG-U95A
NA
HG-U95B
54035_at;
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3729679; 3729722; 3729723; 3729724; 3729725; 3729743; 3729744; 3729758; 3729759; 3729760; 3729761;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P153068;
Whole Human Genome Oligo Microarray:PGID247
A_23_P153070; A_24_P100761;
Related H-InvDB links
H-ANGEL;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
6 .. 6
C/T
rs9907515
+
5'UTR
106 .. 106
G/A
rs146918800
+
5'UTR
157 .. 157
G/A
rs190331483
+
5'UTR
167 .. 167
A/G
rs75216250
+
5'UTR
240 .. 240
T/C
rs146964008
+
5'UTR
251 .. 251
A/G
rs138454404
+
5'UTR
312 ^ 313
-/C
rs34459194
+
5'UTR
353 .. 353
G/A
rs141952267
+
5'UTR
387 .. 387
A/T
rs116034676
+
5'UTR
398 .. 398
C/G
rs61515613
+
5'UTR
449 .. 449
C/G
rs73993469
+
5'UTR
457 .. 457
A/G
rs181527856
+
5'UTR
474 .. 474
C/G
rs9904048
+
5'UTR
482 .. 482
G/A
rs186701030
+
5'UTR
496 .. 496
T/C
rs59631067
+
5'UTR
562 .. 562
C/T
rs116486124
+
5'UTR
675 .. 675
A/C
rs189475523
+
5'UTR
706 .. 706
G/A
rs111346198
+
5'UTR
857 .. 857
A/G
rs139988752
+
5'UTR
1058 ^ 1059
-/CCCCC
rs144191443
+
CDS
1089 .. 1089
G/A
rs201160879
+
CDS
Nonsynonymous[Val63Met]
1134 .. 1134
C/T
rs56286963
+
CDS
Synonymous[Leu78Leu]
1165 .. 1165
A/G
rs79186550
+
CDS
Nonsynonymous[Glu88Gly]
1214 .. 1214
C/T
rs190840639
+
CDS
Synonymous[Ser104Ser]
1232 .. 1232
C/T
rs34510277
+
CDS
Synonymous[Ser110Ser]
1233 .. 1233
G/A
rs202116679
+
CDS
Nonsynonymous[Gly111Arg]
1245 .. 1245
C/T
rs1127351
+
CDS
AA-STOP[Gln115*]
1296 .. 1296
G/A
rs202157302
+
CDS
Nonsynonymous[Gly132Ser]
1334 .. 1334
G/A
rs143232884
+
CDS
Synonymous[Pro144Pro]
1372 .. 1372
C/G
rs200061290
+
CDS
Nonsynonymous[Pro157Arg]
1373 .. 1373
G/A
rs201215333
+
CDS
Synonymous[Pro157Pro]
1384 .. 1384
C/T
rs200314899
+
CDS
Nonsynonymous[Pro161Leu]
1417 .. 1417
G/A
rs199571326
+
3'UTR
1421 .. 1421
C/T
rs150891372
+
3'UTR
1491 .. 1491
A/G
rs181061175
+
3'UTR
1546 .. 1546
A/G
rs185126548
+
3'UTR
1836 .. 1836
A/G
rs149653305
+
3'UTR
1878 .. 1878
G/A
rs189545337
+
3'UTR
1950 .. 1950
T/G
rs114157502
+
3'UTR
1957 .. 1957
C/A
rs2286530
-
3'UTR
1978 .. 1978
T/C
rs183348336
+
3'UTR
2058 .. 2058
C/T
rs144223186
+
3'UTR
2085 .. 2085
T/C
rs140042394
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
THE1C
1
156
-
MIRc
157
244
+
MIRc
737
836
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;