H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000097015 Accession number: BC041978 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical short protein.
 
 

Transcript original information
Accession number BC041978.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:5303050
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 2380[bp] (No. of exon:1)[A:749 T:797 G:448 C:386]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Brain, hypothalamus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 2365(+) Signal: 2336-2340(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0213713
Genomic location  G-integra Help Chromosome 1
Location 1q42.11-1q42.12
Position 224573193- 224575558
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:80232
KEGG GENES KEGG GENES(80232)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000117103
Predicted CDS 81..296;  71[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.723

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000097015
H-Inv cluster ID Locus viewHIX0213713
Accession number BC041978.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000117103
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:80232
KEGG GENES KEGG GENES(80232)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 224897_at;  224898_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 224897_at;  224898_at; 
HG-U133_Plus_2 224897_at;  224898_at; 
HG-U95 50071_at;  53117_at; 
HG-U95A NA
HG-U95B 50071_at;  53117_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2382451;  2382452;  2458084;  2458085;  2458086;  2458087; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P36868; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
186 .. 186 T/C rs4653586 - CDS Nonsynonymous[Trp36Arg]
323 ^ 324 -/A rs56802857 - 3'UTR
368 .. 368 T/A rs114742907 - 3'UTR
541 .. 541 G/A rs17503938 - 3'UTR
587 .. 587 G/C rs10495220 + 3'UTR
622 .. 622 C/A rs181734061 - 3'UTR
674 .. 674 A/C rs1058989 + 3'UTR
719 .. 719 T/- rs34950696 - 3'UTR
1371 .. 1371 A/G rs34687623 - 3'UTR
1589 .. 1589 C/T rs190427362 - 3'UTR
1662 .. 1662 T/C rs184713463 - 3'UTR
1679 .. 1679 G/A rs181362740 - 3'UTR
1755 .. 1755 A/G rs16847904 - 3'UTR
1958 .. 1958 G/A rs12745610 - 3'UTR
2136 .. 2136 C/T rs200605847 - 3'UTR
2181 .. 2181 A/G rs188170134 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer