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H-Invitational ID: HIT000098379 Accession number: BC046515 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Non-protein-coding transcript, non-protein coding (noncoding) transcript

		Select format Flat file XML file Nucleotide sequence fasta

Transcript original information Accession number BC046515.1 CAGE tag ID NA EST ID NA Clone Number IMAGE:4480733 Experimental resources   NBRC ; HGPD ; Sequence data provider NA Annotation project NA Length of cDNA 227[bp] (No. of exon:1)[A:105 T:60 G:28 C:34] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Bladder, transitional cell papilloma Develpmental stage NA
Sequence quality information CDS feature NA Kozak sequence NA PolyA Site: 177(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA	CTCGCGTTGACAAGCCTCCTTGTAATTCTTCAACCAAGGGAATCAAGAGC TCTTACCTCCTTGACTTTAGAGATTCAGTACTCAATTATTTGGCTCCAGC TGGAGCAAATTTGAATATATGTAAATTATACATGTCCCTGTATATATGTA AATATATATAATATGTGTACACATGTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0201189
Genomic location	Chromosome	7
	Location	7p15.2
	Position	27235818- 27235994
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Gene function information

H-Inv ID		HIT000098379
H-Inv cluster ID		HIX0201189
Accession number		BC046515.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Non-protein-coding;
Definition		Non-protein-coding transcript, non-protein coding (noncoding) transcript
Classification of non-protein-coding transcripts		Classification: Identical to known ncRNA
		Type: NA
		Identical to known ncRNA (FR352768) [Identity/coverage = 100.0%/100.0%] to Homo sapiens.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	NA
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Disease/pathology information

Last modified:27-May-2015

Disease relation		Disease name: Guttmacher syndrome (176305);  Disease name: Hand-foot-uterus syndrome (140000);
Related information in OMIM		OMIM ID:  142959;  Title: HOMEOBOX A13
Co-localized orphan diseases		NA
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	NA
	Disease	NA
	Substance	NA
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;