H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000098945 Accession number: BC048277 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BC048277.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:5192259
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1530[bp] (No. of exon:3)[A:431 T:408 G:363 C:328]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Brain, adult, 6 pooled whole brains
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1441(+) Signal: 1419-1423(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0019083
Genomic location  G-integra Help Chromosome 20
Location 20q13.12
Position 42839600- 42854667
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100505783
KEGG GENES KEGG GENES(100505783)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000447148
Predicted CDS 1287..1388;  33[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.797

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000098945
H-Inv cluster ID Locus viewHIX0019083
Accession number BC048277.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000447148
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100505783
KEGG GENES KEGG GENES(100505783)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1558906_a_at; 
HG-U95 67370_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 67370_at; 
HG-U95Av2 NA
HuEx-1_0 3886400;  3886404;  3886409;  3906847; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
3 .. 3 C/G rs188265031 + 5'UTR
18 .. 18 C/G rs148846545 + 5'UTR
21 .. 21 A/G rs4142441 + 5'UTR
78 .. 78 G/C rs58391624 + 5'UTR
95 .. 95 T/G/C rs1843072 - 5'UTR
98 .. 98 C/G rs1843071 - 5'UTR
202 .. 202 G/A rs137957460 + 5'UTR
212 .. 212 C/T rs6124631 + 5'UTR
214 ^ 215 -/C rs71337859 + 5'UTR
240 .. 240 C/G rs4812805 + 5'UTR
447 .. 447 T/C rs78970857 + 5'UTR
504 .. 504 G/T rs145450990 + 5'UTR
509 .. 509 A/G rs11553586 + 5'UTR
512 .. 512 G/A rs73906990 + 5'UTR
585 .. 585 G/A rs62204542 + 5'UTR
596 .. 596 T/G rs185168185 + 5'UTR
631 .. 631 A/G rs189968637 + 5'UTR
639 .. 639 C/T rs183273161 + 5'UTR
708 .. 708 G/T rs75273921 + 5'UTR
719 .. 719 C/A rs1018435 - 5'UTR
811 .. 811 T/- rs112853581 + 5'UTR
836 .. 836 C/G rs1141952 - 5'UTR
894 .. 894 T/C rs186518768 + 5'UTR
908 .. 908 G/A rs6017291 + 5'UTR
1022 .. 1022 C/T rs150175120 + 5'UTR
1225 .. 1225 C/G rs191468007 + 5'UTR
1251 .. 1251 T/C rs142325712 + 5'UTR
1256 .. 1256 C/T rs146382323 + 5'UTR
1317 .. 1317 C/T rs6017292 + CDS Synonymous[Leu11Leu]
1324 .. 1324 G/T rs7267847 + CDS Nonsynonymous[Arg13Leu]
1413 .. 1413 T/G rs80342839 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluSz6 120 244 -
MIRc 494 718 +
L1PA16 896 1147 -
AluSc8 1148 1429 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer