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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000245489 Accession number: AJ242859 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: C-type lectin domain family 4 member K; Langerin; AltName: CD_antigen=CD207;
 
 

Transcript original information
Accession number AJ242859.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (CD207) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (CD207);
Sequence data provider NA
Annotation project NA
Length of cDNA 1999[bp] (No. of exon:6)[A:586 T:469 G:450 C:494]
Devision HUM
Molecular type mRNA
Library origin Cell type Langerhans cells
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1868(+) Signal: 1844-1848(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002142
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71057347- 71062953
Strand -
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:50489
KEGG GENES KEGG GENES(50489)
GeneCard GeneCardCD207*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000109459
Predicted CDS 48..1034;  328[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.759
Database links RefSeq NP_056532
UniProt NA
CCDS NA

Motif information
ORF

length(328),orf(48:1034)
MTVEKEAPDAHFTVDKQNISLWPREPPPKSGPSLVPGKTPTVRAALICLT
LVLVASVLLQAVLYPRFMGTISDVKTNVQLLKGRVDNISTLDSEIKKNSD
GMEAAGVQIQMVNESLGYVRSQFLKLKTSVEKANAQIQILTRSWEEVSTL
NAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDILQVVSQGWK
YFKGNFYYFSLIPKTWYSAEQFCVSRNSHLTSVTSESEQEFLYKTAGGLI
YWIGLTKAGMEGDWSWVDDTPFNKVQSARFWIPGEPNNAGNNEHCGNIKA
PSLQAWNDAPCDKTFLFICKRPYVPSEP*
a.a.
length
InterPro Name
length(131), motif(193:323) 131 IPR016187 C-type lectin fold [Domain]
length(126), motif(195:320) 126 IPR001304 C-type lectin [Domain]
length(121), motif(202:322) 121 IPR016186 C-type lectin-like [Domain]
length(119), motif(202:320) 119 IPR001304 C-type lectin [Domain]
length(109), motif(213:321) 109 IPR001304 C-type lectin [Domain]
length(25), motif(295:319) 25 IPR018378 C-type lectin, conserved site [Conserved_site]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000245489
H-Inv cluster ID Locus viewHIX0002142
Accession number AJ242859.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition C-type lectin domain family 4 member K; Langerin; AltName: CD_antigen=CD207;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9UJ71)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 106614071262639414610287154893341581562115816828165678091733437319175323196903322002660520097424ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol CD207
HGNC aliases "CD207 antigen, langerin"
HGNC name CD207 molecule, langerin
DDBJ NA
UniProt CD207
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000109459
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:50489
KEGG GENES KEGG GENES(50489)
GeneCard GeneCardCD207*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT plasma membrane;  cytosol;  mitochondria;  Other; 
Target P Other
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
72 149 1apaA 9e-09 31.6 76/100 d.165.1.1
198 320 1wmyA 2e-28 31.9 119/140 d.169.1.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL dermal_connective; 
Probe
information DNAProbeLocator
AceGene AGhsA231103; 
Affymetrix
GeneChip
HG-Focus 220428_at; 
HG-U133 220428_at; 
HG-U133A 220428_at; 
HG-U133A_2 220428_at; 
HG-U133B NA
HG-U133_Plus_2 220428_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2558877;  2558878;  2558879;  2558880;  2558881;  2558882;  2558883;  2558884;  2558885;  2558886;  2558887;  2558889;  2558890; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P39790; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P39790; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) AJ302711 MGI:2180021 G-integraG-integra
Orthology Canis sp. (Dog) ENSCAFT00000035196 G-integraG-integra
Orthology Monodelphis sp. (Opossum) ENSMODT00000005861 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000014296 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001100466 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XM_001144168 G-integraG-integra
Orthology Equus sp. (Horse) XM_001492576 G-integraG-integra
Orthology Rattus sp. (Rat) XM_578352 G-integraG-integra
Orthology Bos sp. (Cow) XM_588243 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
20 .. 20 G/C rs142100762 - 5'UTR
59 .. 59 G/A rs60746125 - CDS Synonymous[Glu4Glu]
117 .. 117 C/T rs202094824 - CDS AA-STOP[Arg24*]
119 .. 119 A/G rs79763209 - CDS Synonymous[Arg24Arg]
119 ^ 120 -/G rs11450450 - CDS
134 .. 134 G/A rs79932602 - CDS Synonymous[Lys29Lys]
137 .. 137 C/T rs76024692 - CDS Synonymous[Ser30Ser]
185 .. 185 A/G rs112095621 - CDS Synonymous[Leu46Leu]
211 .. 211 C/T rs10489990 - CDS Nonsynonymous[Ala55Val]
215 .. 215 C/T rs201606068 - CDS Synonymous[Ser56Ser]
230 .. 230 C/T rs201227431 - CDS Synonymous[Ala61Ala]
231 .. 231 G/A rs200240147 - CDS Nonsynonymous[Val62Ile]
244 .. 244 G/A rs72911708 - CDS Nonsynonymous[Arg66Gln]
281 .. 281 C/T rs17662453 - CDS Synonymous[Val78Val]
283 .. 283 A/G rs199819493 - CDS Nonsynonymous[Gln79Arg]
293 .. 293 A/G rs111353551 - CDS Synonymous[Lys82Lys]
298 .. 298 G/A rs115727537 - CDS Nonsynonymous[Arg84His]
338 .. 338 G/A rs41285965 - CDS Synonymous[Lys97Lys]
379 .. 379 T/C rs200049779 - CDS Nonsynonymous[Met111Thr]
388 .. 388 A/T rs72836219 - CDS Nonsynonymous[Glu114Val]
402 .. 402 G/A rs185940860 - CDS Nonsynonymous[Val119Met]
406 .. 406 G/A rs180679087 - CDS Nonsynonymous[Arg120His]
413 .. 413 G/C rs200972797 - CDS Nonsynonymous[Gln122His]
450 .. 450 G/A rs139684762 - CDS Nonsynonymous[Ala135Thr]
453 .. 453 C/G rs17718987 - CDS Nonsynonymous[Gln136Glu]
638 .. 638 A/G rs199605575 - CDS Synonymous[Gln197Gln]
656 .. 656 G/C rs192177291 - CDS Nonsynonymous[Lys203Asn]
684 .. 684 C/T rs17006436 - CDS Nonsynonymous[Pro213Ser]
743 .. 743 G/A rs142863447 - CDS Synonymous[Ser232Ser]
758 .. 758 T/C rs6712863 - CDS Synonymous[Ser237Ser]
785 .. 785 G/T rs138367948 - CDS Synonymous[Ala246Ala]
809 .. 809 C/A rs3213749 - CDS Synonymous[Gly254Gly]
837 .. 837 T/C rs200837270 - CDS Nonsynonymous[Trp264Arg]
880 .. 880 C/T rs741326 + CDS Nonsynonymous[Ala278Val]
909 .. 909 A/G rs13383830 - CDS Nonsynonymous[Asn288Asp]
924 .. 924 G/A rs150276070 - CDS Nonsynonymous[Glu293Lys]
945 .. 945 G/C rs2080391 - CDS Nonsynonymous[Ala300Pro]
985 .. 985 A/T rs57302492 - CDS Nonsynonymous[Lys313Ile]
988 .. 988 C/T rs141388306 - CDS Nonsynonymous[Thr314Met]
989 .. 989 G/A rs2080390 - CDS Synonymous[Thr314Thr]
1009 .. 1009 G/A rs146608670 - CDS Nonsynonymous[Arg321Gln]
1031 .. 1031 G/A rs13421115 - CDS Synonymous[Pro328Pro]
1064 .. 1064 G/C/A rs17006424 - 3'UTR
1071 .. 1071 C/T rs144452787 - 3'UTR
1072 .. 1072 G/A rs140660157 - 3'UTR
1129 .. 1129 C/A rs116070623 - 3'UTR
1130 .. 1130 G/A rs76441599 - 3'UTR
1179 .. 1179 G/A rs190774979 - 3'UTR
1205 .. 1205 C/T rs74392937 - 3'UTR
1252 .. 1252 G/C rs186059238 - 3'UTR
1266 .. 1266 G/C rs183556916 - 3'UTR
1319 .. 1319 G/A rs142322494 - 3'UTR
1321 .. 1321 C/T rs148723258 - 3'UTR
1323 .. 1323 C/T rs2110980 - 3'UTR
1332 .. 1332 G/A rs144214899 - 3'UTR
1386 .. 1386 A/G rs3732245 + 3'UTR
1546 .. 1546 C/T rs140562210 - 3'UTR
1586 .. 1586 C/T rs17656758 - 3'UTR
1629 .. 1629 C/T rs191974180 - 3'UTR
1754 .. 1754 C/T rs187218297 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer