H-InvDB x AHG DB
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H-Invitational ID: HIT000245490 Accession number: AJ242910 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: N-acetyl-D-glucosamine kinase; N-acetylglucosamine kinase; EC=2.7.1.59; GlcNAc kinase;
 
 

Transcript original information
Accession number AJ242910.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1187[bp] (No. of exon:10)[A:273 T:259 G:349 C:306]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002147
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71295797- 71305771
Strand +
Possible duplicated location(s) NA
Gene structure 10 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000022536
Predicted CDS 18..1052;  344[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.791

Motif information
ORF

length(344),orf(18:1052)
MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERIN
EMVNRAKRKAGVDPLVPLRILGLSLSGGDQEDAGRILIEELRDRFPYLSE
SYLITTDAAGSIATATPDGGIVLISGTGSNCRLINPDGSESGCGGWGHMM
GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGI
LTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL
PEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFS
SFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS*
a.a.
length
InterPro Name
length(272), motif(7:278) 272 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000245490
H-Inv cluster ID Locus viewHIX0002147
Accession number AJ242910.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition N-acetyl-D-glucosamine kinase; N-acetylglucosamine kinase; EC=2.7.1.59; GlcNAc kinase;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9UJ70)  [Identity/coverage = 99.419%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 108241161211284312665801147020391548933415815621170103751866964819690332200682312126946022692205ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ N-Acetylglucosamine kinase
UniProt NAGK
EC number EC 2.7.1.59N-acetylglucosamine kinase; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway 00251 :Glutamate metabolism;  00530 :Aminosugars metabolism; 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000022536
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55577
KEGG GENES KEGG GENES(55577)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytoskeleton; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
6 117 2ch6B2 3e-34 98.9 89/89 c.55.1.5
118 344 2ch5A1 2e-74 99.1 224/224 c.55.1.5
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA231106; 
Affymetrix
GeneChip
HG-Focus 218231_at; 
HG-U133 218231_at; 
HG-U133A 218231_at; 
HG-U133A_2 218231_at; 
HG-U133B NA
HG-U133_Plus_2 218231_at; 
HG-U95 46246_at; 
HG-U95A NA
HG-U95B 46246_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2488049;  2488052;  2488055;  2488057;  2488059;  2488061;  2488063;  2488064;  2488066;  2488067;  2488068;  2488069;  2488077; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P154208; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P154208; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
34 .. 34 G/A rs2241265 - CDS Nonsynonymous[Gly6Glu]
89 .. 89 G/A rs77352101 + CDS Synonymous[Gly24Gly]
110 .. 110 T/C rs2287328 - CDS Synonymous[Asp31Asp]
129 .. 129 T/A rs17856147 + CDS Nonsynonymous[Trp38Arg]
183 .. 183 G/A rs192172897 + CDS Nonsynonymous[Ala56Thr]
189 .. 189 C/T rs143520899 + CDS Nonsynonymous[Arg58Trp]
196 .. 196 C/T rs17849984 + CDS Nonsynonymous[Ala60Val]
205 .. 205 A/T rs150821125 + CDS Nonsynonymous[Asp63Val]
209 .. 209 T/A rs2418893 + CDS Synonymous[Pro64Pro]
212 .. 212 G/A rs2418894 + CDS Synonymous[Leu65Leu]
227 .. 227 T/C rs3211088 + CDS Synonymous[Ile70Ile]
245 .. 245 C/T rs143484080 + CDS Synonymous[Ser76Ser]
246 .. 246 G/A rs144077605 + CDS Nonsynonymous[Gly77Ser]
255 .. 255 C/A rs149052839 + CDS Nonsynonymous[Gln80Lys]
264 .. 264 G/C rs200297031 + CDS Nonsynonymous[Ala83Pro]
290 .. 290 G/C rs17849402 + CDS Synonymous[Leu91Leu]
341 .. 341 C/A/T rs11539622 + CDS
345 .. 345 G/A rs146931704 + CDS Nonsynonymous[Gly110Ser]
433 .. 433 C/G rs201875949 + CDS Nonsynonymous[Ser139Cys]
434 .. 434 C/A rs150661812 + CDS Synonymous[Ser139Ser]
443 .. 443 C/G rs1043685 + CDS Synonymous[Gly142Gly]
444 .. 444 T/A rs1043686 + CDS Nonsynonymous[Cys143Ser]
446 .. 446 C/T rs149375267 + CDS Synonymous[Cys143Cys]
450 .. 450 G/A rs144758868 + CDS Nonsynonymous[Gly145Ser]
495 .. 495 G/A rs183509027 + CDS Nonsynonymous[Ala160Thr]
524 .. 524 C/T rs144182116 + CDS Synonymous[Asp169Asp]
545 .. 545 G/A rs144974375 + CDS Synonymous[Ala176Ala]
564 .. 564 T/C rs139590364 + CDS Nonsynonymous[Tyr183His]
566 .. 566 C/T rs145487795 + CDS Synonymous[Tyr183Tyr]
593 .. 593 C/G rs141245714 + CDS Nonsynonymous[Phe192Leu]
606 .. 606 C/T rs142624273 + CDS Nonsynonymous[Arg197Trp]
613 .. 613 G/C rs201078608 + CDS Nonsynonymous[Gly199Ala]
614 .. 614 G/T rs148350552 + CDS Synonymous[Gly199Gly]
622 .. 622 C/T rs148054431 + CDS Nonsynonymous[Thr202Ile]
660 .. 660 G/C rs201526773 + CDS Nonsynonymous[Gly215Arg]
671 .. 671 G/A rs141425614 + CDS Synonymous[Arg218Arg]
672 .. 672 A/T rs76423411 + CDS AA-STOP[Lys219*]
712 .. 712 G/A rs142872700 + CDS Nonsynonymous[Arg232His]
798 .. 798 A/G rs146053228 + CDS Nonsynonymous[Lys261Glu]
830 .. 830 T/C rs112506822 + CDS Synonymous[Ser271Ser]
833 .. 833 G/A rs1043701 + CDS Synonymous[Val272Val]
870 .. 870 T/C rs6713 - CDS Synonymous[Leu285Leu]
874 .. 874 C/T rs144807367 + CDS Nonsynonymous[Ala286Val]
886 .. 886 G/A rs188706050 + CDS Nonsynonymous[Gly290Asp]
917 .. 917 C/T rs112235207 + CDS Synonymous[Ser300Ser]
969 .. 969 C/G rs200730544 + CDS Nonsynonymous[Leu318Val]
976 .. 976 C/T rs139536732 + CDS Nonsynonymous[Ala320Val]
978 .. 978 A/G rs145168741 + CDS Nonsynonymous[Arg321Gly]
1013 .. 1013 C/T rs142009799 + CDS Synonymous[Ser332Ser]
1073 .. 1073 C/T rs145881172 + 3'UTR
1074 .. 1074 C/G rs112773895 + 3'UTR
1138 .. 1138 C/A/G rs112601471 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer