H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000259291 Accession number: BC053571 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number BC053571.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:3861151
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (RNF187) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (RNF187);
Sequence data provider NA
Annotation project NA
Length of cDNA 847[bp] (No. of exon:1)[A:254 T:187 G:203 C:203]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Ovary, adenocarcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 727(+) Signal: 708-712(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0028697
Genomic location  G-integra Help Chromosome 1
Location 1q42.13
Position 228681944- 228682670
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:149603
KEGG GENES KEGG GENES(149603)
GeneCard GeneCardRNF187*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000093237
Predicted CDS 84..413;  109[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.757

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000259291
H-Inv cluster ID Locus viewHIX0028697
Accession number BC053571.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol RNF187
HGNC aliases NA
HGNC name ring finger protein 187
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000093237
No. of interaction 6
Interaction partner(s) HIP000032401HIP000032401HIP000088988HIP000088988HIP000253085HIP000253085
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:149603
KEGG GENES KEGG GENES(149603)
GeneCard GeneCardRNF187*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB191110; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212155_at; 
HG-U133A 212155_at; 
HG-U133A_2 212155_at; 
HG-U133B NA
HG-U133_Plus_2 212155_at; 
HG-U95 39722_at; 
HG-U95A 39722_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2384327;  2459623; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P23995; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
256 .. 256 C/A rs140641641 + CDS Nonsynonymous[Pro58Gln]
387 .. 387 G/C rs12542 - CDS Nonsynonymous[Gly102Arg]
514 .. 514 A/T rs192212622 + 3'UTR
527 .. 527 A/C rs1046390 + 3'UTR
592 .. 592 G/A rs11547452 + 3'UTR
638 .. 638 C/T rs1046450 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer