H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Invitational ID:
HIT000262654
Accession number:
BC067496
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Histone H4;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC067496.1
CAGE tag ID
NA
EST ID
NA
Clone Number
MGC:79352 IMAGE:7002103
Experimental resources
NBRC
;
HGPD
;
Antibody (HIST1H4I)
;
Catalog (HIST1H4I)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
364[bp] (No. of exon:1)[A:76 T:62 G:116 C:110]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
PCR rescued clones
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
ATGTCTGGCCGCGGCAAAGGAGGTAAGGGCCTGGGGAAAGGGGGTGCCAA GCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGTATCACCAAGCCAG CCATTCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATTTCTGGCCTC ATCTATGAGGAGACCCGCGGAGTGTTGAAGGTGTTCCTGGAGAACGTGAT CCGGGACGCCGCGACCTACACGGAGCACGCCAAGCGCAAGACGGTCACCG CCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTATGGC TTCGGCGGCTAAATGGCATTTTGAAGCCCAGTCATTCTCTAAAAAGGCCT TTTTAGGGCCCCCA
Gene structure information
H-Inv cluster ID
HIX0005658
Genomic location
Chromosome
6
Location
6p22.1
Position
27107088- 27107450
Strand
+
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:8294
;
KEGG GENES
KEGG GENES(8294)
;
GeneCard
HIST1H4I
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000098400
Predicted CDS
1..312; 103[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.834
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL IYEETRGVLKVFLENVIRDAATYTEHAKRKTVTAMDVVYALKRQGRTLYG FGG*
Motif information
a.a.
length
InterPro
Name
102
IPR009072
Histone-fold [Domain]
100
IPR009072
Histone-fold [Domain]
12
IPR001951
Histone H4 [Family]
5
IPR019809
Histone H4, conserved site [Conserved_site]
75
IPR001951
Histone H4 [Family]
20
IPR001951
Histone H4 [Family]
67
IPR007125
Histone core [Domain]
21
IPR001951
Histone H4 [Family]
15
IPR001951
Histone H4 [Family]
13
IPR001951
Histone H4 [Family]
12
IPR001951
Histone H4 [Family]
Gene function information
H-Inv ID
HIT000262654
H-Inv cluster ID
HIX0005658
Accession number
BC067496.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Histone H4;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
P62805
) [Identity/coverage = 99.029%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
1916825
;
2474456
;
3035717
;
3340182
;
6314274
;
7626218
;
7664735
;
8988030
;
9031620
;
9119399
;
9439656
;
11387442
;
11448779
;
12086618
;
12408966
;
14574404
;
14578449
;
15345777
;
15489334
;
15527963
;
15592455
;
15951514
;
15964846
;
16678110
;
16959974
;
17081983
;
17967882
;
18669648
;
19608861
;
19690332
;
19818714
;
20068231
;
21269460
;
21406692
;
21724829
;
21925322
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
HIST1H4I
HGNC aliases
"H4 histone family, member M", "histone 1, H4i"
HGNC name
histone cluster 1, H4i
DDBJ
HIST1H4I
UniProt
HIST4H4
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000098400
No. of interaction
129
Interaction partner(s)
HIP000000470
;
HIP000005979
;
HIP000021401
;
HIP000021427
;
HIP000022242
;
HIP000023266
;
HIP000023694
;
HIP000023789
;
HIP000024053
;
HIP000026502
;
HIP000026502
;
HIP000027917
;
HIP000028305
;
HIP000029551
;
HIP000029910
;
HIP000029985
;
HIP000030139
;
HIP000030994
;
HIP000031656
;
HIP000033190
;
HIP000033190
;
HIP000034291
;
HIP000034507
;
HIP000034622
;
HIP000035861
;
HIP000036396
;
HIP000036396
;
HIP000036549
;
HIP000039590
;
HIP000040678
;
HIP000040680
;
HIP000041828
;
HIP000044307
;
HIP000044667
;
HIP000046743
;
HIP000049801
;
HIP000049801
;
HIP000053167
;
HIP000054593
;
HIP000054593
;
HIP000054826
;
HIP000055870
;
HIP000057536
;
HIP000058916
;
HIP000059185
;
HIP000059982
;
HIP000059982
;
HIP000060692
;
HIP000061444
;
HIP000064438
;
HIP000064456
;
HIP000065414
;
HIP000065414
;
HIP000066578
;
HIP000066604
;
HIP000066936
;
HIP000068180
;
HIP000068180
;
HIP000068736
;
HIP000070217
;
HIP000070356
;
HIP000072983
;
HIP000073894
;
HIP000073894
;
HIP000076124
;
HIP000076357
;
HIP000077597
;
HIP000077597
;
HIP000078197
;
HIP000078197
;
HIP000079679
;
HIP000079679
;
HIP000080656
;
HIP000081421
;
HIP000083074
;
HIP000083279
;
HIP000083623
;
HIP000085006
;
HIP000088104
;
HIP000089945
;
HIP000089945
;
HIP000091250
;
HIP000091666
;
HIP000091666
;
HIP000092689
;
HIP000092689
;
HIP000095247
;
HIP000096037
;
HIP000096070
;
HIP000097214
;
HIP000098079
;
HIP000098409
;
HIP000099408
;
HIP000100997
;
HIP000101847
;
HIP000102204
;
HIP000102317
;
HIP000103109
;
HIP000103653
;
HIP000103706
;
HIP000104193
;
HIP000104340
;
HIP000104785
;
HIP000106438
;
HIP000107442
;
HIP000107442
;
HIP000107493
;
HIP000110770
;
HIP000114950
;
HIP000115324
;
HIP000115602
;
HIP000116212
;
HIP000116775
;
HIP000125020
;
HIP000125493
;
HIP000130328
;
HIP000136193
;
HIP000137998
;
HIP000139098
;
HIP000150678
;
HIP000183185
;
HIP000183185
;
HIP000194034
;
HIP000205251
;
HIP000253284
;
HIP000258392
;
HIP000338892
;
HIP000345899
;
HIP000346335
;
BIND
153992; 177961; 182216; 183262; 183265; 183266; 200016; 295234; 297476; 318900; 318905; 318910; 335969; 335973; 89741; 89745;
DIP
135184E; 135188E; 135189E; 135190E; 137167E; 149E; 150E; 177021E; 177022E; 177023E; 177024E; 177025E; 177026E; 177027E; 177028E; 177029E; 177030E; 180095E; 87759E; 87760E;
MINT
MINT-19344; MINT-2490745; MINT-2829358; MINT-2829504; MINT-2829542; MINT-2829576; MINT-2829624; MINT-2829876; MINT-2829895; MINT-2829913; MINT-2830323; MINT-2830357; MINT-2830381; MINT-2830405; MINT-2981755; MINT-2981779; MINT-3296655; MINT-48337; MINT-48494; MINT-49244; MINT-49356; MINT-4950280; MINT-4950315; MINT-56509; MINT-6543302; MINT-6543323; MINT-6543349; MINT-6665465; MINT-7899812; MINT-7900157; MINT-7914854; MINT-7989539; MINT-7989824; MINT-7989846; MINT-7989865; MINT-7989882; MINT-8010325;
HPRD
00146; 00303; 00313; 00528; 00823; 01277; 01574; 01778; 01861; 02183; 02227; 02228; 02457; 02583; 03143; 03183; 03245; 03326; 03465; 03485; 03490; 03494; 03684; 03965; 03995; 04072; 04075; 04078; 04231; 04232; 04255; 04257; 04424; 04531; 04538; 04540; 04955; 05021; 05130; 05131; 05149; 05496; 05569; 05610; 06780; 06789; 06992; 07105; 07513; 07535; 07536; 07601; 09023; 09045; 09094; 09246; 09539; 10024; 10912; 11873; 11897; 11899; 11901; 12531; 13006; 13657; 15094; 15476; 15981; 16246; 16459; 16460; 16872; 19599;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:8294
;
KEGG GENES
KEGG GENES(8294)
;
GeneCard
HIST1H4I
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
FR ID
FR304324
Accession
Description
Location
PMID
Gene ontology information
Molecular function
DNA binding (
GO:0003677
); protein heterodimerization activity (
GO:0046982
);
Biological process
nucleosome assembly (
GO:0006334
);
Cellular component
nucleus (
GO:0005634
); nucleosome (
GO:0000786
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
24
103
1aoiB
2e-14
98.8
80/83
a.22.1.1
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB011101;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
762_f_at;
HG-U95A
762_f_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2899770; 2899771; 2946719;
HuGeneFL
AB000905_at;
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P361347;
Whole Human Genome Oligo Microarray:PGID247
A_24_P20873;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
29 .. 29
G/C
rs140775845
+
CDS
Nonsynonymous[Gly10Ala]
64 .. 64
G/T
rs143050720
+
CDS
Nonsynonymous[Val22Leu]
99 .. 99
A/G
rs151220380
+
CDS
Synonymous[Pro33Pro]
166 .. 166
C/T
rs200159567
+
CDS
Nonsynonymous[Arg56Cys]
170 .. 170
G/A
rs140361782
+
CDS
Nonsynonymous[Gly57Glu]
192 .. 192
G/A
rs150377743
+
CDS
Synonymous[Glu64Glu]
236 .. 236
G/A
rs116193614
+
CDS
Nonsynonymous[Arg79His]
257 .. 257
A/G
rs138088561
+
CDS
Nonsynonymous[Asp86Gly]
292 .. 292
C/G
rs143646853
+
CDS
Nonsynonymous[Leu98Val]
306 .. 306
C/T
rs61742445
+
CDS
Synonymous[Gly102Gly]
315 .. 315
G/A
rs112207956
+
3'UTR
345 .. 345
A/T
rs202114057
+
3'UTR
358 ^ 359
-/GGT
rs201244252
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;