H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
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---
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H-Invitational ID:
HIT000262974
Accession number:
BC068209
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Trinucleotide repeat-containing gene 6A protein; CAG repeat protein 26; EMSY interactor protein; GW182 autoantigen; Protein GW1; Glycine-tryptophan protein of 182 kDa;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
59 .. 59
A/G
rs183229267
+
5'UTR
71 .. 71
T/C
rs113128583
+
5'UTR
213 .. 213
G/A
rs72770429
+
5'UTR
397 .. 397
C/T
rs2303085
-
CDS
Synonymous[His54His]
400 .. 400
C/T
rs199539122
+
CDS
Synonymous[Gly55Gly]
424 .. 424
C/T
rs200242590
+
CDS
Synonymous[Asn63Asn]
595 .. 595
C/T
rs138038217
+
CDS
Synonymous[Pro120Pro]
604 .. 604
G/A
rs202033612
+
CDS
Synonymous[Gln123Gln]
619 .. 619
C/G
rs184014699
+
CDS
Nonsynonymous[Ser128Arg]
645 .. 645
G/A
rs112610295
+
CDS
Nonsynonymous[Cys137Tyr]
649 .. 649
C/T
rs140963676
+
CDS
Synonymous[Ser138Ser]
670 .. 670
C/T
rs144884929
+
CDS
Synonymous[Thr145Thr]
696 .. 696
G/A
rs138756937
+
CDS
Nonsynonymous[Gly154Glu]
700 .. 700
G/T
rs141171921
+
CDS
Synonymous[Leu155Leu]
728 .. 728
G/A
rs150714754
+
CDS
Nonsynonymous[Gly165Ser]
738 .. 738
T/C
rs147808155
+
CDS
Nonsynonymous[Leu168Pro]
754 .. 754
T/C
rs141225765
+
CDS
Synonymous[His173His]
760 .. 760
C/A
rs137997570
+
CDS
Synonymous[Ser175Ser]
764 .. 764
A/G
rs200797787
+
CDS
Nonsynonymous[Ser177Gly]
826 .. 826
C/T
rs75149811
+
CDS
Synonymous[Asn197Asn]
827 .. 827
G/A
rs74872859
+
CDS
Nonsynonymous[Ala198Thr]
854 .. 854
G/A
rs199585927
+
CDS
Nonsynonymous[Gly207Arg]
866 .. 866
T/A
rs147157746
+
CDS
Nonsynonymous[Ser211Thr]
895 .. 895
C/T
rs16974119
+
3'UTR
900 .. 900
G/A
rs201911975
+
3'UTR
914 .. 914
G/A
rs2303083
-
3'UTR
1163 .. 1163
T/-
rs11335420
+
3'UTR
1196 ^ 1197
-/CC/CCC
rs66925397
+
3'UTR
1202 ^ 1203
-/ACCC
rs10643807
+
3'UTR
1203 ^ 1204
-/ACCC
rs35088464
+
3'UTR
1206 ^ 1207
-/CC/CCC
rs55802473
+
3'UTR
1207 .. 1207
G/C
rs112183094
+
3'UTR
1221 .. 1221
C/T
rs1043624
+
3'UTR
1223 .. 1223
C/T
rs1043625
+
3'UTR
1347 .. 1347
T/C
rs150174727
+
3'UTR
1624 .. 1624
T/C
rs10055
-
3'UTR
1650 .. 1650
G/A
rs138636233
+
3'UTR
1692 .. 1692
T/C
rs193262905
+
3'UTR
1736 .. 1736
A/G
rs185042220
+
3'UTR
1837 .. 1837
T/A
rs116438855
+
3'UTR
1837 ^ 1838
-/A
rs71383725
+
3'UTR
1838 .. 1838
A/-/AA
rs72532675
+
3'UTR
1838 ^ 1839
-/A
rs35913858
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;
H-InvDB_9.0 released on May 27, 2015.
