H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000383124 Accession number: Z34290 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Non-protein-coding transcript, C/D box guide small nucleolar RNA (snoRNA) SNORD20 / U20
 
 

Transcript original information
Accession number Z34290.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (SNORD20) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (SNORD20);
Sequence data provider NA
Annotation project NA
Length of cDNA 80[bp] (No. of exon:1)[A:29 T:24 G:15 C:12]
Devision HUM
Molecular type transcribed RNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature NA
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0077693
Genomic location  G-integra Help Chromosome 2
Location 2q37.1
Position 232321155- 232321234
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NR_002908
Ensembl ENST00000384550
Entrez Gene Entrez Gene ID:6082
KEGG GENES KEGG GENES(6082)
GeneCard GeneCardSNORD20*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000383124
H-Inv cluster ID Locus viewHIX0077693
Accession number Z34290.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Non-protein-coding; 
Definition Non-protein-coding transcript, C/D box guide small nucleolar RNA (snoRNA) SNORD20 / U20
Classification of non-protein-coding transcripts Classification: Identical to known ncRNA
Type: short
Identical to known ncRNA (FR075942) [Identity/coverage = 100.0%/100.0%] to Homo sapiens,Mus musculus.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SNORD20
HGNC aliases "RNA, U20 small nucleolar"
HGNC name small nucleolar RNA, C/D box 20
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID NA
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NR_002908
Ensembl ENST00000384550
Entrez Gene Entrez Gene ID:6082
KEGG GENES KEGG GENES(6082)
GeneCard GeneCardSNORD20*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2603472; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666607329609402
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(6082)
Disease Entrez Gene ID:(6082)
Substance Entrez Gene ID:(6082)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA