H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000383124 Accession number: Z34290 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Non-protein-coding transcript, C/D box guide small nucleolar RNA (snoRNA) SNORD20 / U20
 
 

Transcript original information
Accession number Z34290.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (SNORD20) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (SNORD20);
Sequence data provider NA
Annotation project NA
Length of cDNA 80[bp] (No. of exon:1)[A:29 T:24 G:15 C:12]
Devision HUM
Molecular type RNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature NA
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0077693
Genomic location  G-integra Help Chromosome 2
Location 2q37.1
Position 232321155- 232321234
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6082
KEGG GENES KEGG GENES(6082)
GeneCard GeneCardSNORD20*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000383124
H-Inv cluster ID Locus viewHIX0077693
Accession number Z34290.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Non-protein-coding; 
Definition Non-protein-coding transcript, C/D box guide small nucleolar RNA (snoRNA) SNORD20 / U20
Classification of non-protein-coding transcripts Classification: Identical to known ncRNA
Type: short
Identical to known ncRNA (FR075942) [Identity/coverage = 100.0%/100.0%] to Homo sapiens,Mus musculus.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SNORD20
HGNC aliases "RNA, U20 small nucleolar"
HGNC name small nucleolar RNA, C/D box 20
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID NA
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6082
KEGG GENES KEGG GENES(6082)
GeneCard GeneCardSNORD20*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
FR ID FR075942
Accession AC017104, AC102609, X07699, Z34290,
Description C/D box guide small nucleolar RNA (snoRNA) SNORD20 / U20
Location chr2,-,232029399..232029478
PMID 8065311, 8797828, 10736225, 15103394, 8674114, 8878486, 16381836, 18089548, 15608158, 15608161,
FR ID FR236999
Accession DQ587269,
Description Piwi-interacting RNA (piRNA)
Location chr2,-,232029453..232029478
PMID 16751776, 15608161,


Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2603472; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
47 .. 47 C/A rs201263063 -
78 .. 78 G/A rs199970658 -
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer