H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000384018
Accession number:
AF399610
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Olfactory receptor 11G2; Olfactory receptor OR14-34;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AF399610.1
CAGE tag ID
NA
EST ID
NA
Clone Number
OR11G2
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
650[bp] (No. of exon:1)[A:119 T:222 G:134 C:175]
Devision
HUM
Molecular type
DNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
N/C-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TTCTTGGAGATATGTTATGTCACCTCCACAGTCCCCAGCATGCTGGCCAA CTTCCTCTCTGACACCAAGATCATCTCGTTCTCTGGCTGCTTCCTCCAGT TCTACTTTTTCTTCTCCTTGGGCTCTACAGAATGCTTTTTCCTGGCAGTT ATGGCATTTGATCGATACCTTGCCATCTGTCGGCCTCTACGCTATCCAAC CATTATGACCAGACGTCTCTGTACCAATCTTGTGGTCAATTGCTGGGTAC TTGGTTTCATCTGGTTCTTGATTCCTATCGTCAACATCTCCCAAATGTCC TTCTGTGGATCTAGGATTATTGACCACTTCCTATGTGACCCAGCTCCTCT TCTAACTCTCACTTGCAAAAAAGGCCCTGTGATAGAGCTTGTCTTTTCTG TCTTAAGTCCTCTGCCTGTCTTTATGCTCTTTCTCTTCATTGTGGGGTCC TATGCTCTGGTCGTGAGAGCTGTGTTGAGGGTCCCTTCAGCAGCTGGGAG AAGAAAGGCTTTCTCCACCTGTGGGTCTCACCTGGCTGTGGTTTCACTGT TCTACGGCTCAGTACTGGTCATGTATGGGAGCCCACCATCTAAGAATGAA GCTGGAAAGCAGAAGACTGTGACTCTGTTTTATTCTGTTGTTACCCCACT
Gene structure information
H-Inv cluster ID
HIX0037803
Genomic location
Chromosome
14
Location
14q11.2
Position
20665810- 20666459
Strand
+
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000174282
Predicted CDS
1..650; 216[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.744
FLEICYVTSTVPSMLANFLSDTKIISFSGCFLQFYFFFSLGSTECFFLAV MAFDRYLAICRPLRYPTIMTRRLCTNLVVNCWVLGFIWFLIPIVNISQMS FCGSRIIDHFLCDPAPLLTLTCKKGPVIELVFSVLSPLPVFMLFLFIVGS YALVVRAVLRVPSAAGRRKAFSTCGSHLAVVSLFYGSVLVMYGSPPSKNE AGKQKTVTLFYSVVTP
Motif information
a.a.
length
InterPro
Name
216
IPR017452
GPCR, rhodopsin-like, 7TM [Domain]
213
IPR017452
GPCR, rhodopsin-like, 7TM [Domain]
12
IPR000725
Olfactory receptor [Family]
17
IPR000276
G protein-coupled receptor, rhodopsin-like [Family]
13
IPR000725
Olfactory receptor [Family]
17
IPR000725
Olfactory receptor [Family]
10
IPR000725
Olfactory receptor [Family]
Gene function information
H-Inv ID
HIT000384018
H-Inv cluster ID
HIX0037803
Accession number
AF399610.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
Similar to Olfactory receptor 11G2; Olfactory receptor OR14-34;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q8NGC1
) [Identity/coverage = 100.0%/62.61%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
12213199
;
12508121
;
14983052
;
ALL
;
Gene family/group
H-Inv gene family/group ID
HIF0000004
Gene family/group name
Olfactory receptor (OR).
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
OR11G2
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000174282
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family
;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
olfactory receptor activity (
GO:0004984
); G-protein coupled receptor activity (
GO:0004930
);
Biological process
G-protein coupled receptor protein signaling pathway (
GO:0007186
);
Cellular component
integral to membrane (
GO:0016021
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
plasma membrane;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
13 .. 13
T/C
rs149576156
+
CDS
Nonsynonymous[Cys5Arg]
26 .. 26
C/T
rs147301494
+
CDS
Nonsynonymous[Ser9Phe]
31 .. 31
G/A
rs4981088
+
CDS
Nonsynonymous[Val11Ile]
63 .. 63
C/T
rs144948652
+
CDS
Synonymous[Asp21Asp]
69 .. 69
G/C
rs77418176
+
CDS
Nonsynonymous[Lys23Asn]
78 .. 78
G/C
rs4981823
+
CDS
Synonymous[Ser26Ser]
97 .. 97
C/A
rs77997988
+
CDS
Nonsynonymous[Gln33Lys]
97 ^ 98
-/A
rs150549668
+
CDS
98 ^ 99
-/A
rs61106173
+
CDS
111 .. 111
C/G
rs139965904
+
CDS
Nonsynonymous[Phe37Leu]
232 .. 232
G/A
rs76496435
+
CDS
Nonsynonymous[Val78Met]
310 .. 310
T/C
rs202096134
+
CDS
Nonsynonymous[Ser104Pro]
346 .. 346
C/T
rs199984570
+
CDS
Nonsynonymous[Pro116Ser]
364 ^ 365
-/G
rs200369516
+
CDS
366 .. 366
C/G
rs200876108
+
CDS
Nonsynonymous[Cys122Trp]
366 ^ 367
-/A
rs77577169
+
CDS
367 .. 367
A/-
rs77164062
+
CDS
367 ^ 368
-/A
rs55781225
+
CDS
373 .. 373
G/A
rs77471263
+
CDS
Nonsynonymous[Gly125Ser]
375 .. 375
C/G
rs74538160
+
CDS
Synonymous[Gly125Gly]
379 .. 379
G/A
rs138490130
+
CDS
Nonsynonymous[Val127Met]
410 .. 410
C/T
rs140202976
+
CDS
Nonsynonymous[Pro137Leu]
443 .. 443
T/C
rs200606863
+
CDS
Nonsynonymous[Val148Ala]
466 .. 466
A/G
rs144021633
+
CDS
Nonsynonymous[Arg156Gly]
467 .. 467
G/A
rs112959092
+
CDS
Nonsynonymous[Arg156Lys]
552 .. 552
C/T
rs146491252
+
CDS
Synonymous[Phe184Phe]
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;