H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000384018 Accession number: AF399610 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Olfactory receptor 11G2; Olfactory receptor OR14-34;
 
 

Transcript original information
Accession number AF399610.1
CAGE tag ID NA
EST ID NA
Clone Number OR11G2
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 650[bp] (No. of exon:1)[A:119 T:222 G:134 C:175]
Devision HUM
Molecular type DNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N/C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0037803
Genomic location  G-integra Help Chromosome 14
Location 14q11.2
Position 20665810- 20666459
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000174282
Predicted CDS 1..650;  216[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.744

Motif information
ORF

length(216),orf(1:650)
FLEICYVTSTVPSMLANFLSDTKIISFSGCFLQFYFFFSLGSTECFFLAV
MAFDRYLAICRPLRYPTIMTRRLCTNLVVNCWVLGFIWFLIPIVNISQMS
FCGSRIIDHFLCDPAPLLTLTCKKGPVIELVFSVLSPLPVFMLFLFIVGS
YALVVRAVLRVPSAAGRRKAFSTCGSHLAVVSLFYGSVLVMYGSPPSKNE
AGKQKTVTLFYSVVTP
a.a.
length
InterPro Name
length(216), motif(1:216) 216 IPR017452 GPCR, rhodopsin-like, 7TM [Domain]
length(213), motif(3:215) 213 IPR017452 GPCR, rhodopsin-like, 7TM [Domain]
length(12), motif(25:36) 12 IPR000725 Olfactory receptor [Family]
length(17), motif(43:59) 17 IPR000276 G protein-coupled receptor, rhodopsin-like [Family]
length(13), motif(62:74) 13 IPR000725 Olfactory receptor [Family]
length(17), motif(109:125) 17 IPR000725 Olfactory receptor [Family]
length(10), motif(169:178) 10 IPR000725 Olfactory receptor [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000384018
H-Inv cluster ID Locus viewHIX0037803
Accession number AF399610.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Similar to Olfactory receptor 11G2; Olfactory receptor OR14-34;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8NGC1)  [Identity/coverage = 100.0%/62.61%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 122131991250812114983052ALL
Gene family/group Gene family H-Inv gene family/group ID HIF0000004
Gene family/group name Olfactory receptor (OR).
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt OR11G2
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000174282
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene family Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function olfactory receptor activity (GO:0004984);  G-protein coupled receptor activity (GO:0004930); 
Biological process G-protein coupled receptor protein signaling pathway (GO:0007186); 
Cellular component integral to membrane (GO:0016021); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT plasma membrane; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
13 .. 13 T/C rs149576156 + CDS Nonsynonymous[Cys5Arg]
26 .. 26 C/T rs147301494 + CDS Nonsynonymous[Ser9Phe]
31 .. 31 G/A rs4981088 + CDS Nonsynonymous[Val11Ile]
63 .. 63 C/T rs144948652 + CDS Synonymous[Asp21Asp]
69 .. 69 G/C rs77418176 + CDS Nonsynonymous[Lys23Asn]
78 .. 78 G/C rs4981823 + CDS Synonymous[Ser26Ser]
97 .. 97 C/A rs77997988 + CDS Nonsynonymous[Gln33Lys]
97 ^ 98 -/A rs150549668 + CDS
98 ^ 99 -/A rs61106173 + CDS
111 .. 111 C/G rs139965904 + CDS Nonsynonymous[Phe37Leu]
232 .. 232 G/A rs76496435 + CDS Nonsynonymous[Val78Met]
310 .. 310 T/C rs202096134 + CDS Nonsynonymous[Ser104Pro]
346 .. 346 C/T rs199984570 + CDS Nonsynonymous[Pro116Ser]
364 ^ 365 -/G rs200369516 + CDS
366 .. 366 C/G rs200876108 + CDS Nonsynonymous[Cys122Trp]
366 ^ 367 -/A rs77577169 + CDS
367 .. 367 A/- rs77164062 + CDS
367 ^ 368 -/A rs55781225 + CDS
373 .. 373 G/A rs77471263 + CDS Nonsynonymous[Gly125Ser]
375 .. 375 C/G rs74538160 + CDS Synonymous[Gly125Gly]
379 .. 379 G/A rs138490130 + CDS Nonsynonymous[Val127Met]
410 .. 410 C/T rs140202976 + CDS Nonsynonymous[Pro137Leu]
443 .. 443 T/C rs200606863 + CDS Nonsynonymous[Val148Ala]
466 .. 466 A/G rs144021633 + CDS Nonsynonymous[Arg156Gly]
467 .. 467 G/A rs112959092 + CDS Nonsynonymous[Arg156Lys]
552 .. 552 C/T rs146491252 + CDS Synonymous[Phe184Phe]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer