H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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Pathway name*
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RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000386894
Accession number:
BC113441
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Homeobox protein MIXL1; Homeodomain protein MIX; hMix; MIX1 homeobox-like protein 1; Mix.1 homeobox-like protein;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC113441.1
CAGE tag ID
NA
EST ID
NA
Clone Number
MGC:142001 IMAGE:8322493
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
815[bp] (No. of exon:2)[A:129 T:146 G:246 C:294]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Brain, cerebellum, PCR rescued clones
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CCTGGCCCGGGAGGGTATAAGTGCGGCCCGCGCCCCTCCGAGCGGCGCGC TGGGTTCCGGAGCGATGGCCACAGCCGAGTCCCGTGCGCTCCAGTTTGCC GAGGGCGCCGCGTTTCCAGCGTACCGGGCCCCCCACGCCGGCGGGGCGCT CCTGCCGCCCCCGAGCCCTGCGGCAGCCCTGCTCCCTGCGCCGCCCGCGG GCCCCGGCCCAGCGACCTTTGCGGGCTTCCTCGGCCGGGACCCCGGGCCG GCCCCGCCGCCCCCCGCCAGCCTGGGCTCGCCTGCGCCCCCCAAAGGCGC GGCCGCCCCGTCGGCGTCGCAGCGCCGCAAGCGCACGTCTTTCAGCGCCG AACAGCTGCAGCTGCTGGAGCTCGTCTTCCGCCGGACCCGGTACCCCGAC ATCCACTTGCGCGAGCGCCTGGCCGCGCTCACCCTGCTCCCCGAGTCCAG GATCCAGGTATGGTTCCAGAACAGGCGTGCCAAGTCTCGGCGTCAGAGTG GGAAATCCTTCCAACCTTTGGCTAGGCCGGAGATTATCCTCAACCACTGT GCTCCTGGAACTGAAACGAAATGTCTGAAGCCCCAGCTGCCTCTTGAGGT AGATGTGAACTGCCTGCCCGAACCAAACGGGGTTGGAGGGGGCATCTCTG ACTCTAGCTCCCAAGGTCAGAATTTTGAAACCTGTTCCCCTCTCTCTGAA GACATTGGTTCAAAGCTGGACTCATGGGAGGAACACATCTTTTCTGCCTT TGGTAACTTTTGAGGATTCTGGGAGAATTCGGGATAAGCTCTGAGGAGCC ATGACTGACAGCCTG
Gene structure information
H-Inv cluster ID
HIX0028575
Genomic location
Chromosome
1
Location
1q42.12
Position
226411319- 226413565
Strand
+
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:83881
;
KEGG GENES
KEGG GENES(83881)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000035135
Predicted CDS
65..763; 232[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.742
Database links
RefSeq
NP_114150
;
UniProt
Q9H2W2
;
CCDS
CCDS1552
;
MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPA TFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQL LELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQSGKSFQ PLARPEIILNHCAPGTETKCLKPQLPLEVDVNCLPEPNGVGGGISDSSSQ GQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF*
Motif information
a.a.
length
InterPro
Name
65
IPR009057
Homeodomain-like [Domain]
66
IPR009057
Homeodomain-like [Domain]
61
IPR001356
Homeobox domain [Domain]
63
IPR001356
Homeobox domain [Domain]
57
IPR001356
Homeobox domain [Domain]
24
IPR017970
Homeobox, conserved site [Conserved_site]
Gene function information
H-Inv ID
HIT000386894
H-Inv cluster ID
HIX0028575
Accession number
BC113441.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Homeobox protein MIXL1; Homeodomain protein MIX; hMix; MIX1 homeobox-like protein 1; Mix.1 homeobox-like protein;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9H2W2
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
11084649
;
12070013
;
15489334
;
16433620
;
16710414
;
17224082
;
17303500
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
MIXL1
UniProt
MIXL1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000035135
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:83881
;
KEGG GENES
KEGG GENES(83881)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
DNA binding (
GO:0003677
); sequence-specific DNA binding (
GO:0043565
);
Biological process
regulation of transcription, DNA-dependent (
GO:0006355
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
86
155
1b72B
1e-16
22.9
70/73
a.4.1.1
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
blood/spleen/LND;
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
NA
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
368 .. 368
G/C
rs202005618
+
CDS
Nonsynonymous[Glu102Gln]
436 .. 436
G/A
rs202018885
+
CDS
Synonymous[Leu124Leu]
489 .. 489
G/T
rs145225693
+
CDS
Nonsynonymous[Arg142Leu]
558 ^ 559
-/C
rs36100504
+
CDS
562 .. 562
T/C
rs150124070
+
CDS
Synonymous[Thr166Thr]
584 .. 584
C/T
rs79599422
+
CDS
AA-STOP[Gln174*]
589 .. 589
G/A
rs143213308
+
CDS
Synonymous[Leu175Leu]
613 .. 613
C/T
rs3738796
-
CDS
Synonymous[Cys183Cys]
623 .. 623
C/A
rs201172577
+
CDS
Nonsynonymous[Pro187Thr]
655 .. 655
T/C
rs114679749
+
CDS
Synonymous[Ser197Ser]
664 .. 664
A/C
rs200310896
+
CDS
Nonsynonymous[Gln200His]
689 .. 689
C/T
rs151275498
+
CDS
Nonsynonymous[Pro209Ser]
713 .. 713
A/G
rs200659360
+
CDS
Nonsynonymous[Lys217Glu]
748 .. 748
C/T
rs143393232
+
CDS
Synonymous[Ala228Ala]
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;