H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000388056 Accession number: BC119737 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Putative uncharacterized protein C21orf88;
 
 

Transcript original information
Accession number BC119737.2
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:40119171
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 591[bp] (No. of exon:3)[A:117 T:138 G:160 C:176]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type PCR rescued clones
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0227113
Genomic location  G-integra Help Chromosome 21
Location 21q22.2
Position 40969528- 40984342
Strand -
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:114041
KEGG GENES KEGG GENES(114041)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000094119
Predicted CDS 51..488;  145[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.762

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000388056
H-Inv cluster ID Locus viewHIX0227113
Accession number BC119737.2
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Putative uncharacterized protein C21orf88;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P59052)  [Identity/coverage = 99.31%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence NA
PubMed ID 108309531203629715489334ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt C21orf88
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000094119
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:114041
KEGG GENES KEGG GENES(114041)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
20 .. 20 A/G rs190864220 - 5'UTR
34 .. 34 C/G rs74789072 - 5'UTR
64 .. 64 G/A rs141178643 - CDS Nonsynonymous[Arg5Gln]
123 .. 123 G/A rs74562558 - CDS Nonsynonymous[Gly25Arg]
163 .. 163 C/T rs75556276 - CDS Nonsynonymous[Pro38Leu]
178 ^ 179 -/G rs36074145 - CDS
196 .. 196 T/G rs77607750 - CDS AA-STOP[Leu49*]
222 .. 222 G/A rs114656184 - CDS Nonsynonymous[Gly58Arg]
261 ^ 262 -/A rs72380951 - CDS
293 .. 293 G/C rs662571 - CDS Nonsynonymous[Trp81Cys]
339 .. 339 G/A rs181126970 - CDS Nonsynonymous[Val97Met]
366 .. 366 G/A rs138630268 - CDS Nonsynonymous[Val106Ile]
415 .. 415 G/A rs150194909 - CDS Nonsynonymous[Arg122His]
464 .. 464 G/A rs140909128 - CDS Synonymous[Pro138Pro]
498 .. 498 G/A rs661650 - 3'UTR
499 .. 499 T/C rs2091883 + 3'UTR
514 .. 514 A/G rs2091884 + 3'UTR
525 .. 525 G/T rs199549042 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIR 8 130 -
MLT1E2 206 590 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer