H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
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Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
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FR ID
FR Accession number
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GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000388056
Accession number:
BC119737
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Putative uncharacterized protein C21orf88;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC119737.2
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:40119171
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
591[bp] (No. of exon:3)[A:117 T:138 G:160 C:176]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
PCR rescued clones
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CGCAGTGACGACCCAGTGAAGTAGATGCCTTGACGATTCCCATTTCACGG ATGAGACGACTCCGGCACAGAGAAGTCAGAGGGCCTGTCCTGGGTCACAC AGCCACAGGCGGCCCCCAGAACGGGACTTCAGGGTGCACCACTGCACCCC AGCAGAGACCTCCGCCTGGCACACAGGGAATGCTGGAGCAATACTTAAAT AGGGGAGGTCAGAAATCTCACGGGCTCTGCTGGCTTCTGTGCTTCGTCTC TCAAGGCCAAAATCAAGATGTCATCAGTGCTGAGCTCTGGTGGAGGATCC ACGTCCAGGCTCACTGGGGCTGCTGGCAGAATTCAGCTGTGTGGGGTTGT AGGAATGAAGTCCTTGTTTCCTTGCTGGCTGTTGGCCAGGGGCTGCCCTC AGCTTCTGGAGGCCGCCTGCCCTCCCTGGTTCATGGCCCATCTCATCCTG ACAGCCAGCACCCGCGGGAAGTCCCTCTTGCACTGTGACTCTCTCCCGTC TCTTCCATTCTCTATGGCTTGTCTGCCTCCCTCTTTCATCTTTAAGAGTG CATGTGAGTATATTGGACCTACCTGAATCAGCCAGGCTAAC
Gene structure information
H-Inv cluster ID
HIX0227113
Genomic location
Chromosome
21
Location
21q22.2
Position
40969528- 40984342
Strand
-
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:114041
;
KEGG GENES
KEGG GENES(114041)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000094119
Predicted CDS
51..488; 145[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.762
MRRLRHREVRGPVLGHTATGGPQNGTSGCTTAPQQRPPPGTQGMLEQYLN RGGQKSHGLCWLLCFVSQGQNQDVISAELWWRIHVQAHWGCWQNSAVWGC RNEVLVSLLAVGQGLPSASGGRLPSLVHGPSHPDSQHPREVPLAL*
Gene function information
H-Inv ID
HIT000388056
H-Inv cluster ID
HIX0227113
Accession number
BC119737.2
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Putative uncharacterized protein C21orf88;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
P59052
) [Identity/coverage = 99.31%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
NA
PubMed ID
10830953
;
12036297
;
15489334
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
C21orf88
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000094119
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:114041
;
KEGG GENES
KEGG GENES(114041)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Twilight zone
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
20 .. 20
A/G
rs190864220
-
5'UTR
34 .. 34
C/G
rs74789072
-
5'UTR
64 .. 64
G/A
rs141178643
-
CDS
Nonsynonymous[Arg5Gln]
123 .. 123
G/A
rs74562558
-
CDS
Nonsynonymous[Gly25Arg]
163 .. 163
C/T
rs75556276
-
CDS
Nonsynonymous[Pro38Leu]
178 ^ 179
-/G
rs36074145
-
CDS
196 .. 196
T/G
rs77607750
-
CDS
AA-STOP[Leu49*]
222 .. 222
G/A
rs114656184
-
CDS
Nonsynonymous[Gly58Arg]
261 ^ 262
-/A
rs72380951
-
CDS
293 .. 293
G/C
rs662571
-
CDS
Nonsynonymous[Trp81Cys]
339 .. 339
G/A
rs181126970
-
CDS
Nonsynonymous[Val97Met]
366 .. 366
G/A
rs138630268
-
CDS
Nonsynonymous[Val106Ile]
415 .. 415
G/A
rs150194909
-
CDS
Nonsynonymous[Arg122His]
464 .. 464
G/A
rs140909128
-
CDS
Synonymous[Pro138Pro]
498 .. 498
G/A
rs661650
-
3'UTR
499 .. 499
T/C
rs2091883
+
3'UTR
514 .. 514
A/G
rs2091884
+
3'UTR
525 .. 525
G/T
rs199549042
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIR
8
130
-
MLT1E2
206
590
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;