H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000389450
Accession number:
BC127831
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Hypothetical short protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC127831.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:40134190
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
456[bp] (No. of exon:1)[A:105 T:136 G:121 C:94]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
PCR rescued clones, C list
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGCCGCTGTGGTGACTCCACGTCTGTGTCACTGAGGTGACCTGCGTGTCA CTGAGGTGGCCACCATGCTGGCCTGCGGCATGTGCAGGGAGCTGAGGCTG TTTCCAGGTGATGCTGCTGTGTGGAGAAGGTTCTGAGATGCAGTGAGGGA AGAAAGGATCCTGCTGGGGATTCCATTGTAAGCACCTATAATCGGGAATT TTCATGTAACAGCTTTGACATTTAAACATTCTGAGTTTGGTGCCAGCTCA GATTTGATTATATTTTATTTTGGATGGGTGTAATTCACAGCACAGTTCTA ATCTCCCAAATCTTTCTGCTTTTTAGAATGAAGTATAAAAATACTTTTCT CACCTGAATACCAAGGGTTGGCCCTTTAGTTGGATCATTGTCATATGACT TGGTAGATCCTTGTCCTCAGCACCTCACGTGAGAGAAGGGAGTCACCACA GCGGCC
Gene structure information
H-Inv cluster ID
HIX0213687
Genomic location
Chromosome
1
Location
1q42.13
Position
227179823- 227180278
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:8476
;
KEGG GENES
KEGG GENES(8476)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000176396
Predicted CDS
274..357; 27[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.702
MGVIHSTVLISQIFLLFRMKYKNTFLT*
Gene function information
H-Inv ID
HIT000389450
H-Inv cluster ID
HIX0213687
Accession number
BC127831.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Hypothetical short protein.
Similarity category
Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000176396
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:8476
;
KEGG GENES
KEGG GENES(8476)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
NA
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
45 .. 45
G/A
rs184630947
-
5'UTR
205 .. 205
T/C
rs16846772
-
5'UTR
404 .. 404
T/G
rs12741503
-
3'UTR
418 .. 418
C/T
rs146341950
-
3'UTR
451 .. 451
G/C
rs117021021
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;