H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Invitational ID:
HIT000389872
Accession number:
BC128462
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Protein TEX261.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC128462.1
CAGE tag ID
NA
EST ID
NA
Clone Number
MGC:156307 IMAGE:40126645
Experimental resources
NBRC
;
HGPD
;
Antibody (TEX261)
;
Catalog (TEX261)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
772[bp] (No. of exon:6)[A:148 T:198 G:205 C:221]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
PCR rescued clones
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GTGTCGCCGGAGCCGAAGCGCGCAGGCCCGTCCCGGTGGCCGGGGAGCGG GCGGGTGGGGGCGCCATGTGGTTCATGTACCTGCTGAGCTGGCTGTCGCT CTTCATCCAGGTGGCCTTCATCACGCTGGCTGTCGCGGCTGGACTCTATT ACCTGGCAGAACTGATAGAAGAATACACAGTGGCCACCAGCAGGATCATA AAATACATGATCTGGTTCTCCACCGCTGTACTGATTGGCCTCTACGTCTT TGAGCGCTTCCCCACCAGCATGATTGGAGTGGGCCTATTCACCAACCTCG TCTACTTTGGCCTCCTCCAGACCTTCCCCTTCATCATGCTGACCTCGCCT AACTTCATCCTGTCGTGTGGACTAGTGGTGGTGAATCATTACCTAGCATT TCAGTTTTTTGCAGAAGAATATTATCCCTTCTCAGAGGTCCTGGCCTATT TCACTTTCTGCCTGTGGATAATTCCGTTTGCGTTTTTTGTGTCACTTTCG GCCGGGGAGAACGTCCTGCCCTCTACCATGCAGCCAGGAGATGATGTCGT CTCCAATTATTTCACCAAAGGCAAGCGGGGCAAACGCTTAGGGATCCTGG TTGTCTTCTCCTTCATCAAAGAGGCCATTCTACCCAGTCGTCAGAAGATA TACTGACCCCCATGCAGGCAGGATGTGGGGGGCAAGATCAGGAGAGTCAG GCCCCTGGGCCTCTATGCCAGGTGGGGACCAGAAGTCGGGAAGGCACCTA CCACCTGCCCTGGCTTTCTTCC
Gene structure information
H-Inv cluster ID
HIX0002145
Genomic location
Chromosome
2
Location
2p13.3
Position
71215614- 71221952
Strand
-
Possible duplicated location(s)
NA
Gene structure
6 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:113419
;
KEGG GENES
KEGG GENES(113419)
;
GeneCard
TEX261
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000114573
Predicted CDS
66..656; 196[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.763
Database links
RefSeq
NP_653183
;
UniProt
Q6UWH6
;
CCDS
CCDS1914
;
MWFMYLLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIW FSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILS CGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENV LPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY*
Motif information
a.a.
length
InterPro
Name
187
IPR007277
Transmembrane adaptor Erv26 [Family]
195
IPR007277
Transmembrane adaptor Erv26 [Family]
Gene function information
H-Inv ID
HIT000389872
H-Inv cluster ID
HIX0002145
Accession number
BC128462.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Protein TEX261.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_653183
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
TEX261
HGNC aliases
"testis expressed sequence 261"
HGNC name
testis expressed 261
DDBJ
TEX261
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000114573
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:113419
;
KEGG GENES
KEGG GENES(113419)
;
GeneCard
TEX261
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
plasma membrane;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
74 .. 74
C/T
rs147546717
-
CDS
Synonymous[Phe3Phe]
77 .. 77
G/A
rs138397761
-
CDS
Nonsynonymous[Met4Ile]
131 .. 131
T/C
rs2302561
-
CDS
Synonymous[Ala22Ala]
177 .. 177
A/G
rs151285112
-
CDS
Nonsynonymous[Thr38Ala]
178 .. 178
C/T
rs112546882
-
CDS
Nonsynonymous[Thr38Ile]
185 .. 185
C/T
rs73937099
-
CDS
Synonymous[Ala40Ala]
240 .. 240
C/A
rs201866499
-
CDS
Nonsynonymous[Leu59Ile]
245 .. 245
C/T
rs199620224
-
CDS
Synonymous[Tyr60Tyr]
281 .. 281
G/T
rs199958956
-
CDS
Synonymous[Val72Val]
299 .. 299
C/T
rs201927886
-
CDS
Synonymous[Leu78Leu]
326 .. 326
C/T
rs149762858
-
CDS
Synonymous[Phe87Phe]
354 .. 354
T/A
rs115676218
-
CDS
Nonsynonymous[Phe97Ile]
365 .. 365
G/A
rs150757206
-
CDS
Synonymous[Ser100Ser]
476 .. 476
G/A
rs2286979
-
CDS
Synonymous[Pro137Pro]
481 .. 481
C/T
rs140118400
-
CDS
Nonsynonymous[Ala139Val]
581 .. 581
C/A
rs141586238
-
CDS
Synonymous[Gly172Gly]
585 .. 585
C/T
rs200711339
-
CDS
Nonsynonymous[Arg174Cys]
603 .. 603
G/A
rs201814978
-
CDS
Nonsynonymous[Val180Ile]
676 .. 676
T/C/A
rs112821054
-
3'UTR
769 .. 769
T/G/C/A
rs4852735
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;