H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000389872 Accession number: BC128462 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protein TEX261.
 
 

Transcript original information
Accession number BC128462.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:156307 IMAGE:40126645
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TEX261) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TEX261);
Sequence data provider NA
Annotation project NA
Length of cDNA 772[bp] (No. of exon:6)[A:148 T:198 G:205 C:221]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type PCR rescued clones
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002145
Genomic location  G-integra Help Chromosome 2
Location 2p13.3
Position 71215614- 71221952
Strand -
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:113419
KEGG GENES KEGG GENES(113419)
GeneCard GeneCardTEX261*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000114573
Predicted CDS 66..656;  196[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.763
Database links RefSeq NP_653183
UniProt Q6UWH6
CCDS CCDS1914

Motif information
ORF

length(196),orf(66:656)
MWFMYLLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIW
FSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILS
CGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENV
LPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY*
a.a.
length
InterPro Name
length(187), motif(1:187) 187 IPR007277 Transmembrane adaptor Erv26 [Family]
length(195), motif(2:196) 195 IPR007277 Transmembrane adaptor Erv26 [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000389872
H-Inv cluster ID Locus viewHIX0002145
Accession number BC128462.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protein TEX261.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_653183)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TEX261
HGNC aliases "testis expressed sequence 261"
HGNC name testis expressed 261
DDBJ TEX261
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000114573
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:113419
KEGG GENES KEGG GENES(113419)
GeneCard GeneCardTEX261*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT plasma membrane; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
74 .. 74 C/T rs147546717 - CDS Synonymous[Phe3Phe]
77 .. 77 G/A rs138397761 - CDS Nonsynonymous[Met4Ile]
131 .. 131 T/C rs2302561 - CDS Synonymous[Ala22Ala]
177 .. 177 A/G rs151285112 - CDS Nonsynonymous[Thr38Ala]
178 .. 178 C/T rs112546882 - CDS Nonsynonymous[Thr38Ile]
185 .. 185 C/T rs73937099 - CDS Synonymous[Ala40Ala]
240 .. 240 C/A rs201866499 - CDS Nonsynonymous[Leu59Ile]
245 .. 245 C/T rs199620224 - CDS Synonymous[Tyr60Tyr]
281 .. 281 G/T rs199958956 - CDS Synonymous[Val72Val]
299 .. 299 C/T rs201927886 - CDS Synonymous[Leu78Leu]
326 .. 326 C/T rs149762858 - CDS Synonymous[Phe87Phe]
354 .. 354 T/A rs115676218 - CDS Nonsynonymous[Phe97Ile]
365 .. 365 G/A rs150757206 - CDS Synonymous[Ser100Ser]
476 .. 476 G/A rs2286979 - CDS Synonymous[Pro137Pro]
481 .. 481 C/T rs140118400 - CDS Nonsynonymous[Ala139Val]
581 .. 581 C/A rs141586238 - CDS Synonymous[Gly172Gly]
585 .. 585 C/T rs200711339 - CDS Nonsynonymous[Arg174Cys]
603 .. 603 G/A rs201814978 - CDS Nonsynonymous[Val180Ile]
676 .. 676 T/C/A rs112821054 - 3'UTR
769 .. 769 T/G/C/A rs4852735 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer